Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QY067_RS29120 Genome accession   NZ_CP129685
Coordinates   6077346..6077711 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PA2500     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6072346..6082711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY067_RS29105 pilK 6073690..6074565 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  QY067_RS29110 pilJ 6074626..6076674 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  QY067_RS29115 - 6076759..6077295 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  QY067_RS29120 pilH 6077346..6077711 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  QY067_RS29125 pilG 6077758..6078165 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  QY067_RS29130 gshB 6078420..6079373 (+) 954 WP_003100943.1 glutathione synthase -
  QY067_RS29135 - 6079520..6080413 (+) 894 WP_003084580.1 TonB family protein -
  QY067_RS29140 - 6080462..6081031 (+) 570 WP_003084577.1 YqgE/AlgH family protein -
  QY067_RS29145 ruvX 6081031..6081465 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  QY067_RS29150 pyrR 6081577..6082089 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=780726 QY067_RS29120 WP_003084587.1 6077346..6077711(-) (pilH) [Pseudomonas aeruginosa strain PA2500]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=780726 QY067_RS29120 WP_003084587.1 6077346..6077711(-) (pilH) [Pseudomonas aeruginosa strain PA2500]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364