Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QY067_RS21675 Genome accession   NZ_CP129685
Coordinates   4522248..4522577 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA2500     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4517248..4527577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY067_RS21660 uvrB 4518635..4520647 (-) 2013 WP_003091426.1 excinuclease ABC subunit UvrB Machinery gene
  QY067_RS21665 - 4520835..4522031 (+) 1197 WP_003091428.1 amino acid aminotransferase -
  QY067_RS21675 comEA/comE1 4522248..4522577 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  QY067_RS21680 - 4522768..4524765 (-) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  QY067_RS21685 - 4524778..4525803 (-) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  QY067_RS21690 - 4525904..4526848 (-) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=780711 QY067_RS21675 WP_003091430.1 4522248..4522577(-) (comEA/comE1) [Pseudomonas aeruginosa strain PA2500]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=780711 QY067_RS21675 WP_003091430.1 4522248..4522577(-) (comEA/comE1) [Pseudomonas aeruginosa strain PA2500]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385