Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PPM45_RS06250 Genome accession   NZ_CP116870
Coordinates   1209407..1210528 (+) Length   373 a.a.
NCBI ID   WP_010886479.1    Uniprot ID   O31604
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context

Location: 1204407..1215528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS06215 yjbB 1205049..1206266 (+) 1218 WP_010886478.1 MFS transporter -
  PPM45_RS06220 yjbC 1206430..1207008 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  PPM45_RS06225 spx 1207189..1207584 (+) 396 WP_003245483.1 transcriptional regulator Spx -
  PPM45_RS06230 yjbE 1207627..1208283 (-) 657 WP_003232944.1 TerC family protein -
  PPM45_RS06235 - 1208453..1208593 (+) 141 WP_119122854.1 hypothetical protein -
  PPM45_RS06240 mecA 1208560..1209216 (+) 657 WP_003245194.1 adaptor protein MecA Regulator
  PPM45_RS06245 - 1209211..1209333 (-) 123 WP_003245684.1 hypothetical protein -
  PPM45_RS06250 coiA 1209407..1210528 (+) 1122 WP_010886479.1 competence protein CoiA Machinery gene
  PPM45_RS06255 pepF 1210758..1212587 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  PPM45_RS06260 - 1212625..1212792 (-) 168 WP_003244944.1 hypothetical protein -
  PPM45_RS06265 spxH 1213106..1214005 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  PPM45_RS06270 bhbI 1214002..1214400 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  PPM45_RS06275 cwlQ 1214655..1215389 (-) 735 WP_003245645.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 43689.70 Da        Isoelectric Point: 10.1187

>NTDB_id=780701 PPM45_RS06250 WP_010886479.1 1209407..1210528(+) (coiA) [Bacillus subtilis subsp. subtilis strain Master_strain]
MFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCAIDIEPESAYHLEGKRQLYVWLKTQRASPILEP
YIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSTFHWQFINASPY
RELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPHRFNSKETNRL
RLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNKNIALRSECSE
ECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=780701 PPM45_RS06250 WP_010886479.1 1209407..1210528(+) (coiA) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACGGTTCTTCTGTCCGGTATGCGGGGGAGAGCT
AGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGAACAAGTCCTGCGCCATAGACATCGAGCCGG
AAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAAACGCAACGGGCTTCACCAATATTGGAGCCG
TATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCAAGGAGCATATGCTTGCTGTTGAATATCAATGCGC
CACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAGAAGGAATCATCCCGCAGTGGATTATGGGAT
ACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAACTTTTCATTGGCAGTTTATCAATGCAAGTCCATAC
AGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAGCCACATCATTCCATTCTACACAAACCATTC
TTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGGCGATCTTTTTTTCACTGAACCGAAACCCTCAATTC
AATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCATCGGTTTAACTCAAAGGAAACAAATCGCCTT
AGGCTGCTGTTTTATGAGAAACGACAGACGCCTTTTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTAGAAAAGGGGC
AGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTATGACGGATCTTGGAGGTAAACGTGCGCCAA
TTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAGAACATTGCACTCAGGTCCGAATGCAGCGAA
GAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAGT
ATATGTGCTGAATCAGCCTGCAGGAGGCATACACTCCATGCAGGATCTCATAGAAAGAGACCGCAGCTGTTTTATAGAAT
GA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O31604

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

100

100

1