Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   PPM34_RS17910 Genome accession   NZ_CP116869
Coordinates   3485226..3485345 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3480226..3490345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS17890 albG 3480390..3481091 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  PPM34_RS17895 ywhL 3481097..3482473 (-) 1377 WP_003244415.1 YncE family protein -
  PPM34_RS17900 ywhK 3482512..3483867 (-) 1356 WP_003227552.1 YncE family protein -
  PPM34_RS19845 - 3483864..3484094 (-) 231 WP_009968328.1 hypothetical protein -
  PPM34_RS17905 rapF 3484097..3485242 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  PPM34_RS17910 phrF 3485226..3485345 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  PPM34_RS17915 ywhH 3485444..3485917 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  PPM34_RS17920 speB 3485949..3486821 (-) 873 WP_003227545.1 agmatinase -
  PPM34_RS17925 speE 3486882..3487712 (-) 831 WP_003227543.1 spermidine synthase -
  PPM34_RS17930 pbpG 3487914..3489989 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=780667 PPM34_RS17910 WP_009968329.1 3485226..3485345(+) (phrF) [Bacillus subtilis subsp. subtilis strain MGP001]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=780667 PPM34_RS17910 WP_009968329.1 3485226..3485345(+) (phrF) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487