Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PPM34_RS16860 Genome accession   NZ_CP116869
Coordinates   3282244..3282933 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3277244..3287933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS16825 flgN 3277424..3277906 (-) 483 WP_003227999.1 flagellar protein FlgN -
  PPM34_RS16830 flgM 3277922..3278188 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  PPM34_RS16835 yvyF 3278269..3278688 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  PPM34_RS16840 comFC 3278762..3279484 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  PPM34_RS16845 comFB 3279448..3279744 (-) 297 WP_003227989.1 late competence protein ComFB -
  PPM34_RS16850 comFA 3279804..3281195 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  PPM34_RS16855 fakBA 3281301..3282146 (-) 846 WP_003244125.1 DegV family protein -
  PPM34_RS16860 degU 3282244..3282933 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PPM34_RS16865 degS 3283016..3284173 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  PPM34_RS16870 yvyE 3284390..3285043 (+) 654 WP_003227979.1 YigZ family protein -
  PPM34_RS16875 tagV 3285043..3286218 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  PPM34_RS16880 tagO 3286291..3287367 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=780661 PPM34_RS16860 WP_003219701.1 3282244..3282933(-) (degU) [Bacillus subtilis subsp. subtilis strain MGP001]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=780661 PPM34_RS16860 WP_003219701.1 3282244..3282933(-) (degU) [Bacillus subtilis subsp. subtilis strain MGP001]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1