Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PPM34_RS16840 Genome accession   NZ_CP116869
Coordinates   3278762..3279484 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3273762..3284484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS16805 fliW 3273901..3274332 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  PPM34_RS16810 yviE 3274353..3274928 (-) 576 WP_003243053.1 DUF6470 family protein -
  PPM34_RS16815 flgL 3274975..3275871 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  PPM34_RS16820 flgK 3275882..3277405 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  PPM34_RS16825 flgN 3277424..3277906 (-) 483 WP_003227999.1 flagellar protein FlgN -
  PPM34_RS16830 flgM 3277922..3278188 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  PPM34_RS16835 yvyF 3278269..3278688 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  PPM34_RS16840 comFC 3278762..3279484 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  PPM34_RS16845 comFB 3279448..3279744 (-) 297 WP_003227989.1 late competence protein ComFB -
  PPM34_RS16850 comFA 3279804..3281195 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  PPM34_RS16855 fakBA 3281301..3282146 (-) 846 WP_003244125.1 DegV family protein -
  PPM34_RS16860 degU 3282244..3282933 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PPM34_RS16865 degS 3283016..3284173 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=780659 PPM34_RS16840 WP_003227991.1 3278762..3279484(-) (comFC) [Bacillus subtilis subsp. subtilis strain MGP001]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=780659 PPM34_RS16840 WP_003227991.1 3278762..3279484(-) (comFC) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1