Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   QY067_RS00720 Genome accession   NZ_CP129685
Coordinates   144430..144954 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA2500     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 139430..149954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY067_RS00700 - 139497..141968 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  QY067_RS00705 pilM 142153..143217 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QY067_RS00710 pilN 143217..143813 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QY067_RS00715 pilO 143810..144433 (+) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  QY067_RS00720 comL/pilP 144430..144954 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QY067_RS00725 pilQ 145008..147152 (+) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  QY067_RS00730 aroK 147164..147682 (+) 519 WP_003095833.1 shikimate kinase AroK -
  QY067_RS00735 aroB 147732..148838 (+) 1107 WP_003095831.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=780654 QY067_RS00720 WP_003095836.1 144430..144954(+) (comL/pilP) [Pseudomonas aeruginosa strain PA2500]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=780654 QY067_RS00720 WP_003095836.1 144430..144954(+) (comL/pilP) [Pseudomonas aeruginosa strain PA2500]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362