Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PPM34_RS14900 Genome accession   NZ_CP116869
Coordinates   2890441..2891085 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2885441..2896085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS14865 mrpB 2886633..2887064 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  PPM34_RS14870 mrpC 2887064..2887405 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  PPM34_RS14875 mrpD 2887398..2888879 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  PPM34_RS14880 mrpE 2888885..2889361 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  PPM34_RS14885 mrpF 2889361..2889645 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  PPM34_RS14890 mnhG 2889629..2890003 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  PPM34_RS14895 yuxO 2890042..2890422 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  PPM34_RS14900 comA 2890441..2891085 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  PPM34_RS14905 comP 2891166..2893475 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  PPM34_RS14910 comX 2893490..2893657 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  PPM34_RS14915 comQ 2893645..2894544 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  PPM34_RS14920 degQ 2894729..2894869 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  PPM34_RS14925 - 2895091..2895216 (+) 126 WP_003228793.1 hypothetical protein -
  PPM34_RS14930 - 2895330..2895698 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=780652 PPM34_RS14900 WP_003220716.1 2890441..2891085(-) (comA) [Bacillus subtilis subsp. subtilis strain MGP001]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=780652 PPM34_RS14900 WP_003220716.1 2890441..2891085(-) (comA) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1