Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   PPM30_RS17740 Genome accession   NZ_CP116868
Coordinates   3396683..3396802 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain MGP003     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3391683..3401802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM30_RS17720 albG 3391847..3392548 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  PPM30_RS17725 ywhL 3392554..3393930 (-) 1377 WP_003244415.1 YncE family protein -
  PPM30_RS17730 ywhK 3393969..3395324 (-) 1356 WP_003227552.1 YncE family protein -
  PPM30_RS19670 - 3395321..3395551 (-) 231 WP_009968328.1 hypothetical protein -
  PPM30_RS17735 rapF 3395554..3396699 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  PPM30_RS17740 phrF 3396683..3396802 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  PPM30_RS17745 ywhH 3396901..3397374 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  PPM30_RS17750 speB 3397406..3398278 (-) 873 WP_003227545.1 agmatinase -
  PPM30_RS17755 speE 3398339..3399169 (-) 831 WP_003227543.1 spermidine synthase -
  PPM30_RS17760 pbpG 3399371..3401446 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=780583 PPM30_RS17740 WP_009968329.1 3396683..3396802(+) (phrF) [Bacillus subtilis subsp. subtilis strain MGP003]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=780583 PPM30_RS17740 WP_009968329.1 3396683..3396802(+) (phrF) [Bacillus subtilis subsp. subtilis strain MGP003]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487