Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QYR07_RS05490 Genome accession   NZ_CP129653
Coordinates   1156687..1158567 (-) Length   626 a.a.
NCBI ID   WP_010872250.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1151687..1163567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR07_RS05460 (QYR07_05440) fabG 1152207..1152950 (+) 744 WP_010872244.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QYR07_RS05465 (QYR07_05445) - 1152950..1153759 (+) 810 WP_010872245.1 aminotransferase class IV -
  QYR07_RS05470 (QYR07_05450) - 1153988..1154494 (+) 507 WP_010872246.1 hypothetical protein -
  QYR07_RS05475 (QYR07_05455) - 1154515..1155741 (+) 1227 WP_010872247.1 ABC1 kinase family protein -
  QYR07_RS05480 (QYR07_05460) - 1155829..1156161 (+) 333 WP_020861632.1 hypothetical protein -
  QYR07_RS05485 (QYR07_05465) - 1156238..1156633 (+) 396 WP_010872249.1 clan AA aspartic protease -
  QYR07_RS05490 (QYR07_05470) uvrC 1156687..1158567 (-) 1881 WP_010872250.1 excinuclease ABC subunit UvrC Machinery gene
  QYR07_RS05495 (QYR07_05475) - 1158687..1160462 (+) 1776 WP_010872251.1 N-acetylmuramoyl-L-alanine amidase -
  QYR07_RS05500 (QYR07_05480) - 1160445..1160918 (-) 474 WP_010872252.1 M67 family metallopeptidase -
  QYR07_RS05505 (QYR07_05485) - 1161099..1161482 (-) 384 WP_070097961.1 hypothetical protein -
  QYR07_RS05510 (QYR07_05490) - 1161514..1163025 (-) 1512 WP_010872254.1 site-2 protease family protein -

Sequence

Protein


Download         Length: 626 a.a.        Molecular weight: 71896.50 Da        Isoelectric Point: 9.4746

>NTDB_id=780552 QYR07_RS05490 WP_010872250.1 1156687..1158567(-) (uvrC) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S3]
MVATVSSTSLLEQPELLERRLQEIPQEPGVYFMGDRQGEILYIGKAKKLRTRVRSYFRDSQPHTARIALMVQQVAEIEFI
VTDTEAEALALEANLIKQHQPHFNVLLKDDKKYPYVCITWSETYPRIFITRKRRLNQAKDRYYGPYVDSFSLRQTLRLIQ
RIFPLRQRRQPLFKHRPCLNYDIGRCPGVCQELITPEDYRQTLQKVAMVFQGRTQELHQLLTQQMEKAAADLKFEQAALI
RDQINSLGKLNADQKVSLPQDTISRDAIAVASDGQISAIQLFQIRAGRLVGRLGFFADGVESELEKGEVLQRVLEQHYQQ
VEAVEIPSEVILPCALPDGELLNDWLTSQRGRKVTFNLPQRQTKAELLEMVERNAQYELERLQKQTAKNVTALEDLAEIL
NLETLPKRIEGYDISHIQGSNAVASQVVFIDGVPAQQYYRHYKIKNPSIKVGHSDDFASLAEVIIRRFQSSVKGKKNQQD
WPDLIMIDGGKGQLSAVVKVLKKMDLLDKFTVVSLAKQREEIFLPGESQPLPTHAEQPGVQLLRRLRDEAHRFAVSFHRQ
QRLSKSRRSRLDEIPGLGFSRQKQLLAHFRSLDYIREASVKQLQEVPGIGPQLAQTIYDYFHPVNS

Nucleotide


Download         Length: 1881 bp        

>NTDB_id=780552 QYR07_RS05490 WP_010872250.1 1156687..1158567(-) (uvrC) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S3]
ATGGTTGCTACTGTTTCCTCTACGTCTCTTCTTGAACAACCAGAATTATTAGAACGGCGTCTCCAGGAAATTCCCCAAGA
GCCGGGGGTTTACTTCATGGGCGATCGCCAAGGAGAAATTCTCTACATCGGCAAGGCAAAAAAATTGAGAACTAGGGTTA
GATCCTATTTTCGGGATTCCCAACCCCACACTGCCCGCATTGCTTTGATGGTGCAACAGGTAGCGGAAATTGAGTTTATT
GTCACCGATACGGAAGCGGAAGCTTTAGCCTTAGAAGCTAATTTAATCAAACAACACCAACCCCATTTTAATGTTCTGCT
TAAAGATGATAAAAAATATCCTTATGTGTGTATCACCTGGTCAGAAACCTATCCCCGTATTTTTATTACCAGAAAACGCC
GTTTAAACCAGGCTAAGGATCGTTACTACGGGCCCTATGTGGATAGTTTTAGTTTACGGCAAACATTGCGATTAATACAA
CGTATTTTTCCTCTGCGGCAACGTCGTCAGCCCCTATTCAAACATCGTCCTTGCTTAAATTATGACATTGGCCGTTGTCC
TGGAGTTTGCCAAGAATTAATTACCCCAGAAGACTACCGCCAAACCTTACAAAAAGTCGCTATGGTTTTCCAGGGACGTA
CCCAGGAACTACATCAATTGTTAACGCAACAAATGGAAAAGGCGGCGGCAGATTTAAAGTTTGAACAGGCGGCTCTAATT
CGGGACCAAATTAATTCCCTCGGTAAACTCAACGCTGATCAAAAAGTTTCCTTACCCCAGGACACCATTTCCAGAGATGC
GATCGCCGTGGCCAGCGATGGACAAATTAGTGCCATTCAACTTTTCCAAATTAGGGCGGGAAGATTGGTAGGAAGGCTGG
GATTTTTCGCCGATGGAGTGGAGTCGGAGTTGGAAAAAGGGGAAGTATTACAGCGGGTTTTGGAACAGCATTATCAACAG
GTCGAAGCGGTGGAAATTCCCAGCGAAGTCATTCTGCCCTGTGCTTTACCTGATGGAGAATTGCTCAATGATTGGTTAAC
TAGCCAACGGGGAAGAAAAGTAACTTTTAACCTCCCCCAAAGACAAACCAAAGCTGAGCTATTGGAAATGGTGGAACGTA
ACGCCCAGTACGAGTTAGAGAGGTTACAAAAACAGACTGCTAAAAACGTTACAGCGCTAGAAGATTTAGCGGAAATTTTA
AATTTAGAAACTTTGCCAAAACGCATTGAAGGTTATGATATTTCCCACATTCAGGGTTCTAATGCTGTAGCTTCCCAAGT
TGTATTTATTGATGGAGTGCCAGCCCAACAGTATTATCGCCATTATAAAATTAAAAACCCGTCCATTAAAGTCGGTCACT
CTGACGATTTCGCCAGTTTGGCAGAAGTTATTATCCGCCGTTTTCAATCCTCTGTAAAAGGCAAAAAAAATCAACAGGAT
TGGCCAGATTTAATTATGATTGATGGCGGTAAAGGTCAACTATCAGCGGTGGTTAAGGTGCTGAAGAAAATGGATTTGCT
GGATAAATTTACGGTGGTCAGTTTAGCGAAACAAAGGGAAGAAATTTTTCTACCGGGAGAATCCCAACCCTTGCCCACCC
ACGCGGAACAACCTGGAGTGCAATTATTACGCCGTTTGCGGGATGAAGCCCATCGCTTTGCGGTCAGTTTCCACCGTCAA
CAACGGCTTAGTAAAAGTCGGCGATCGCGCTTGGATGAAATTCCTGGTTTAGGTTTTAGTCGCCAAAAACAATTGTTAGC
CCATTTCCGTTCTTTGGATTATATTCGGGAGGCCAGTGTCAAACAATTACAGGAAGTACCAGGTATTGGTCCCCAGTTAG
CCCAGACAATTTATGATTACTTTCATCCGGTTAATTCATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(217-249)

GIY-YIG catalytic domain (GIY-YIG)

(28-102)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(398-555)

Helix-hairpin-helix motif (HHH_2)

(574-622)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.16

99.84

0.361
  uvrC Streptococcus pneumoniae R6

36.16

99.84

0.361
  uvrC Streptococcus pneumoniae D39

36.16

99.84

0.361