Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QYT36_RS00025 Genome accession   NZ_CP129562
Coordinates   5828..6424 (-) Length   198 a.a.
NCBI ID   WP_000559159.1    Uniprot ID   Q99WC3
Organism   Staphylococcus aureus strain 316M     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 828..11424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT36_RS00020 (QYT36_00020) - 5518..5623 (-) 106 Protein_0 hypothetical protein -
  QYT36_RS00025 (QYT36_00025) recR 5828..6424 (-) 597 WP_000559159.1 recombination mediator RecR Machinery gene
  QYT36_RS00030 (QYT36_00030) - 6431..6748 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  QYT36_RS00035 (QYT36_00035) dnaX 6838..8535 (-) 1698 WP_001109040.1 DNA polymerase III subunit gamma/tau -
  QYT36_RS00040 (QYT36_00040) - 8604..9128 (-) 525 WP_001167828.1 GNAT family N-acetyltransferase -
  QYT36_RS00045 (QYT36_00045) - 9266..9367 (-) 102 WP_001790661.1 hypothetical protein -
  QYT36_RS00055 (QYT36_00055) treR 9771..10499 (-) 729 WP_001118675.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22072.49 Da        Isoelectric Point: 4.7564

>NTDB_id=780449 QYT36_RS00025 WP_000559159.1 5828..6424(-) (recR) [Staphylococcus aureus strain 316M]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKSDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=780449 QYT36_RS00025 WP_000559159.1 5828..6424(-) (recR) [Staphylococcus aureus strain 316M]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAACAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCACCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAGCG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q99WC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475