Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MWM15_RS06335 Genome accession   NZ_AP025675
Coordinates   1318782..1319519 (-) Length   245 a.a.
NCBI ID   WP_000197692.1    Uniprot ID   -
Organism   Escherichia coli strain Rb-3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1313782..1324519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM15_RS06305 (TRECRb3_12300) yfiL 1313941..1314306 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  MWM15_RS06310 (TRECRb3_12310) aroF 1314516..1315586 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  MWM15_RS06315 (TRECRb3_12320) tyrA 1315597..1316718 (+) 1122 WP_000225234.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MWM15_RS06320 (TRECRb3_12330) pheA 1316761..1317921 (-) 1161 WP_033557076.1 bifunctional chorismate mutase/prephenate dehydratase -
  MWM15_RS06325 pheL 1318020..1318067 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MWM15_RS06330 (TRECRb3_12340) raiA 1318171..1318512 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MWM15_RS06335 (TRECRb3_12350) comL 1318782..1319519 (-) 738 WP_000197692.1 outer membrane protein assembly factor BamD Machinery gene
  MWM15_RS06340 (TRECRb3_12360) rluD 1319654..1320634 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MWM15_RS06345 (TRECRb3_12370) yfiH 1320631..1321362 (+) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  MWM15_RS06350 (TRECRb3_12380) clpC 1321492..1324065 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27928.53 Da        Isoelectric Point: 7.1589

>NTDB_id=78029 MWM15_RS06335 WP_000197692.1 1318782..1319519(-) (comL) [Escherichia coli strain Rb-3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQRFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=78029 MWM15_RS06335 WP_000197692.1 1318782..1319519(-) (comL) [Escherichia coli strain Rb-3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAAGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment