Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PKO50_RS26080 Genome accession   NZ_CP116775
Coordinates   5713249..5714586 (+) Length   445 a.a.
NCBI ID   WP_275627653.1    Uniprot ID   -
Organism   Pseudomonas sp. 273     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5708249..5719586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKO50_RS26055 pgeF 5708442..5709170 (-) 729 WP_275627650.1 peptidoglycan editing factor PgeF -
  PKO50_RS26060 rluD 5709167..5710126 (-) 960 WP_275627651.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PKO50_RS26065 - 5710273..5711286 (+) 1014 WP_089390498.1 outer membrane protein assembly factor BamD -
  PKO50_RS26070 - 5711425..5711655 (+) 231 WP_089390497.1 PP0621 family protein -
  PKO50_RS26075 pilS 5711648..5713237 (+) 1590 WP_275627652.1 ATP-binding protein Regulator
  PKO50_RS26080 pilR 5713249..5714586 (+) 1338 WP_275627653.1 sigma-54 dependent transcriptional regulator Regulator
  PKO50_RS26085 thiO 5714822..5715931 (-) 1110 WP_275627654.1 glycine oxidase ThiO -
  PKO50_RS26090 - 5716108..5716620 (+) 513 WP_275627655.1 GspH/FimT family pseudopilin -
  PKO50_RS26095 - 5716770..5717249 (+) 480 WP_275627656.1 GspH/FimT family pseudopilin -
  PKO50_RS26100 pilV 5717246..5717800 (+) 555 WP_275627657.1 type IV pilus modification protein PilV -
  PKO50_RS26105 - 5717812..5718591 (+) 780 WP_275627658.1 PilW family protein -
  PKO50_RS26110 - 5718588..5719121 (+) 534 WP_275627659.1 PilX N-terminal domain-containing pilus assembly protein -
  PKO50_RS26115 - 5719137..5719274 (+) 138 WP_275627660.1 hypothetical protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49583.85 Da        Isoelectric Point: 5.6331

>NTDB_id=780230 PKO50_RS26080 WP_275627653.1 5713249..5714586(+) (pilR) [Pseudomonas sp. 273]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFLTKPVDLGRLRELVATALRLRSPGAEDAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLASDSGLAAAQVSAEALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPQDLRFAEATGNSDAGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=780230 PKO50_RS26080 WP_275627653.1 5713249..5714586(+) (pilR) [Pseudomonas sp. 273]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGACGAACCGGATATCCGCGAGCTGCTGGAAATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCAAGGAATACCTGGCCCGCGAACCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCATCCCCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACGGCCCTGCGCCTGCGCTCGCCGGGCGCGGAGGATGCGCCGGTGGACAACC
GCCTGCTCGGCGATTCGCCGCCGATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTGGCCCGGCTGATCCACGAACAGGGCCCGCGCAGCGAAGTGGCCTT
CGTTCCGGTGAACTGCGGCGCCATCCCCTCCGAGCTGATGGAAAGCGAATTCTTCGGGCACAAGAAAGGCAGCTTCACCG
GCGCGGTCGAGGACAAGCAGGGCCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTCGACGAGGTGGCCGACCTGCCA
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAGAAGGCCGTGCGCGCGGTGGGCGGCCAGCAGGAAGTGGCGGT
GGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTGGCCGCGGAAGTCGCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAAGACATCCCGCTGCTCACCGAGCGCGTG
CTCAAGCGCTTGGCCAGCGACAGCGGCCTGGCGGCGGCCCAGGTCAGCGCCGAGGCCCTGGAGAAGCTGAAGAGCTACCG
CTTCCCGGGCAACGTGCGCGAACTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAGGACGACGTCATCCAGCCCC
AGGACCTGCGCTTCGCCGAGGCCACCGGCAACAGCGACGCCGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAGGAC
TACCTCGAAGAGATCGAACGCAAGCTGATCATGCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCCGCCCAGCG
CCTGGGCCTGACCTTCCGCTCCATGCGCTACCGGCTGAAGAAGCTCGGTATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.213

100

0.892
  pilR Acinetobacter baumannii strain A118

49.673

100

0.512