Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PKO50_RS26075 Genome accession   NZ_CP116775
Coordinates   5711648..5713237 (+) Length   529 a.a.
NCBI ID   WP_275627652.1    Uniprot ID   -
Organism   Pseudomonas sp. 273     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5706648..5718237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKO50_RS26055 pgeF 5708442..5709170 (-) 729 WP_275627650.1 peptidoglycan editing factor PgeF -
  PKO50_RS26060 rluD 5709167..5710126 (-) 960 WP_275627651.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PKO50_RS26065 - 5710273..5711286 (+) 1014 WP_089390498.1 outer membrane protein assembly factor BamD -
  PKO50_RS26070 - 5711425..5711655 (+) 231 WP_089390497.1 PP0621 family protein -
  PKO50_RS26075 pilS 5711648..5713237 (+) 1590 WP_275627652.1 ATP-binding protein Regulator
  PKO50_RS26080 pilR 5713249..5714586 (+) 1338 WP_275627653.1 sigma-54 dependent transcriptional regulator Regulator
  PKO50_RS26085 thiO 5714822..5715931 (-) 1110 WP_275627654.1 glycine oxidase ThiO -
  PKO50_RS26090 - 5716108..5716620 (+) 513 WP_275627655.1 GspH/FimT family pseudopilin -
  PKO50_RS26095 - 5716770..5717249 (+) 480 WP_275627656.1 GspH/FimT family pseudopilin -
  PKO50_RS26100 pilV 5717246..5717800 (+) 555 WP_275627657.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58246.33 Da        Isoelectric Point: 7.5102

>NTDB_id=780229 PKO50_RS26075 WP_275627652.1 5711648..5713237(+) (pilS) [Pseudomonas sp. 273]
MARAIPISGQQGQRILRLYHLYRLSIGLLLVLLISSDLDDRVLNVGQSALFHASCWSYLIVNILIAVLMPTPRQLLPIFL
LALFDILALCGLFYAAGGVPSGIGNLLVVAVGIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSQPTAINHYVQAGSLGA
LSFAAALLLQGLARRQQLTEHLAEERATTVANLEELNALILQRMRTGILVLDSRHRVLLANQSALGLLAQPDLVGKLATA
QCPELLESLQQWVQNPSLRPPSLQAPEGGPMLQPSFIPLRRGEEQHTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLQESDALDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQQLDLKQWLQRFTDEQREGLRGDQ
QIHLQLGGGEIQTRMDPSQLTQVLGNLVQNGLRYSARQNGSGQVWLNLFRDKDSDLPVLEVLDDGPGIAPEQLGKLFEPF
FTTESKGTGLGLYISRELCESNQARIDFKNRDEGGGGFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=780229 PKO50_RS26075 WP_275627652.1 5711648..5713237(+) (pilS) [Pseudomonas sp. 273]
ATGGCTAGGGCCATCCCCATCAGCGGCCAGCAGGGGCAGCGCATCCTCCGCCTGTACCACCTGTACCGCCTGAGCATCGG
CCTGCTGCTGGTGCTGCTGATCTCCAGCGACCTCGACGACCGGGTGCTCAACGTCGGCCAGTCCGCGCTGTTCCATGCCA
GTTGCTGGAGCTACCTGATCGTCAACATCCTGATCGCCGTGCTGATGCCGACGCCGCGCCAGCTGCTGCCGATCTTCCTG
CTGGCGCTGTTCGACATCCTCGCGCTGTGCGGCCTGTTCTACGCCGCCGGCGGCGTGCCCAGCGGCATCGGCAACCTGCT
GGTGGTGGCGGTGGGCATCGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCGTCGCCGCCATCGGCA
TGATCTACCTGACCTTCTACCTCAGCCTAAGCCAGCCCACGGCGATCAACCACTACGTCCAGGCCGGCAGCCTGGGCGCC
CTGAGCTTCGCCGCCGCCCTGCTGCTGCAGGGACTGGCACGGCGCCAGCAACTCACCGAGCACCTGGCCGAGGAACGCGC
CACCACCGTGGCCAACCTCGAGGAACTCAACGCCCTCATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGGACAGCC
GGCACCGGGTACTGCTGGCCAACCAGAGCGCCCTGGGCCTGCTGGCCCAGCCGGACCTGGTGGGCAAGCTCGCCACCGCG
CAATGCCCGGAACTGCTCGAAAGCCTGCAGCAGTGGGTACAGAACCCCTCGCTGCGCCCGCCGAGCCTGCAAGCACCCGA
AGGCGGCCCCATGCTGCAGCCGAGCTTCATCCCGCTGCGCCGCGGCGAGGAGCAGCACACCCTGGTATTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAGGCCCAGCAACTCAAGCTGGCGGCCCTGGGCCGTCTGACCGCCGGCATCGCCCACGAGATC
CGCAACCCGCTGGGCGCCATCAGCCACGCCGCGCAACTGCTGCAGGAATCGGACGCGCTGGACGCCCCCGACCGGCGCCT
GACGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTGATCGAGAACGTCCTGCAGCTGTCGCGGCGGCGCCAGG
CCGAACCGCAGCAGCTGGACCTCAAGCAGTGGCTGCAGCGCTTCACCGACGAGCAGCGCGAAGGCCTGCGCGGCGACCAG
CAGATCCACCTGCAACTGGGCGGCGGCGAGATCCAGACGCGCATGGACCCCAGCCAGCTCACCCAGGTGCTGGGTAACCT
GGTGCAGAATGGGTTACGGTACAGTGCGAGGCAGAACGGCAGCGGCCAGGTGTGGCTGAACCTGTTCCGCGACAAGGACA
GCGACCTGCCGGTGCTGGAGGTGCTCGACGACGGCCCCGGCATCGCCCCGGAGCAGCTGGGCAAGCTGTTCGAGCCCTTC
TTCACCACCGAGAGCAAGGGCACCGGGCTGGGCCTGTACATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCGCATCGA
CTTCAAGAACCGCGACGAAGGCGGTGGCGGCTTCCGCATCACCTTCGCCCACCCGCGCAAGCAGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

73.485

99.811

0.733