Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PNF30_RS11375 Genome accession   NZ_CP116774
Coordinates   2219019..2219921 (-) Length   300 a.a.
NCBI ID   WP_272510183.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2214019..2224921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS11360 (PNF30_11360) xerC 2214396..2215313 (-) 918 WP_205185012.1 tyrosine recombinase XerC -
  PNF30_RS11365 (PNF30_11365) trmFO 2215376..2216680 (-) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PNF30_RS11370 (PNF30_11370) topA 2216751..2218826 (-) 2076 WP_111290908.1 type I DNA topoisomerase -
  PNF30_RS11375 (PNF30_11375) dprA 2219019..2219921 (-) 903 WP_272510183.1 DNA-processing protein DprA Machinery gene
  PNF30_RS11380 (PNF30_11380) sucD 2219985..2220887 (-) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  PNF30_RS11385 (PNF30_11385) sucC 2220910..2222070 (-) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  PNF30_RS11390 (PNF30_11390) - 2222247..2222522 (-) 276 WP_047202155.1 FlhB-like flagellar biosynthesis protein -
  PNF30_RS11395 (PNF30_11395) - 2222519..2224258 (-) 1740 WP_272510184.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34073.47 Da        Isoelectric Point: 9.1119

>NTDB_id=780185 PNF30_RS11375 WP_272510183.1 2219019..2219921(-) (dprA) [Bacillus safensis strain SRCM125915]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
LPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSAYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFSMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=780185 PNF30_RS11375 WP_272510183.1 2219019..2219921(-) (dprA) [Bacillus safensis strain SRCM125915]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
CTTCCCATCACATCGCCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACAAGAGTTCCGTCAGCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCGAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGCTTTCAGCATTTATATCCAAAAGAGCATGC
GCAAATGGCTCAATACATGGGAGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTTAAACCAGAAAAGTGGCATT
TTTCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACGATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCAGTTGCGGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

38.033

100

0.387
  dprA Lactococcus lactis subsp. cremoris KW2

37.847

96

0.363