Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PNF30_RS07950 Genome accession   NZ_CP116774
Coordinates   1548569..1549372 (+) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus safensis strain SRCM125915     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1543569..1554372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS07930 (PNF30_07930) - 1543571..1544425 (+) 855 WP_095408976.1 TlyA family RNA methyltransferase -
  PNF30_RS07935 (PNF30_07935) ahrC 1544589..1545038 (+) 450 WP_272510923.1 transcriptional regulator AhrC/ArgR -
  PNF30_RS07940 (PNF30_07940) recN 1545072..1546805 (+) 1734 WP_272510924.1 DNA repair protein RecN Machinery gene
  PNF30_RS07945 (PNF30_07945) spoIVB 1547005..1548282 (+) 1278 WP_272510925.1 SpoIVB peptidase -
  PNF30_RS07950 (PNF30_07950) spo0A 1548569..1549372 (+) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  PNF30_RS07955 (PNF30_07955) - 1549830..1550930 (+) 1101 WP_144484601.1 Rap family tetratricopeptide repeat protein -
  PNF30_RS07960 (PNF30_07960) - 1551157..1551894 (+) 738 WP_272510926.1 glycerophosphodiester phosphodiesterase -
  PNF30_RS07965 (PNF30_07965) - 1551931..1552167 (-) 237 WP_111292269.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=780179 PNF30_RS07950 WP_024422935.1 1548569..1549372(+) (spo0A) [Bacillus safensis strain SRCM125915]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=780179 PNF30_RS07950 WP_024422935.1 1548569..1549372(+) (spo0A) [Bacillus safensis strain SRCM125915]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTACATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGAAATGACGAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCTATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATC
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCGATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACTAAAGTGTTGTACCCAGACATTGCGAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTGGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCCGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884