Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PNF30_RS07940 Genome accession   NZ_CP116774
Coordinates   1545072..1546805 (+) Length   577 a.a.
NCBI ID   WP_272510924.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1540072..1551805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS07915 (PNF30_07915) - 1540382..1540642 (+) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -
  PNF30_RS07920 (PNF30_07920) - 1540626..1541522 (+) 897 WP_391509712.1 polyprenyl synthetase family protein -
  PNF30_RS07925 (PNF30_07925) dxs 1541673..1543574 (+) 1902 WP_144471078.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PNF30_RS07930 (PNF30_07930) - 1543571..1544425 (+) 855 WP_095408976.1 TlyA family RNA methyltransferase -
  PNF30_RS07935 (PNF30_07935) ahrC 1544589..1545038 (+) 450 WP_272510923.1 transcriptional regulator AhrC/ArgR -
  PNF30_RS07940 (PNF30_07940) recN 1545072..1546805 (+) 1734 WP_272510924.1 DNA repair protein RecN Machinery gene
  PNF30_RS07945 (PNF30_07945) spoIVB 1547005..1548282 (+) 1278 WP_272510925.1 SpoIVB peptidase -
  PNF30_RS07950 (PNF30_07950) spo0A 1548569..1549372 (+) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  PNF30_RS07955 (PNF30_07955) - 1549830..1550930 (+) 1101 WP_144484601.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64625.43 Da        Isoelectric Point: 4.8106

>NTDB_id=780178 PNF30_RS07940 WP_272510924.1 1545072..1546805(+) (recN) [Bacillus safensis strain SRCM125915]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISILREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALA
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSAFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIHKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=780178 PNF30_RS07940 WP_272510924.1 1545072..1546805(+) (recN) [Bacillus safensis strain SRCM125915]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACAGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGTTCTTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTTTGC
GAAGAGCAAGGAATTGATGCGTCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
CATTAATGGAAAGCTTGTCACGATCTCAATTTTACGTGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGGGCTGAAGAAATTGCACCGGCTCTCGCG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTAAGGCAGCTGTCTGAGAACGAGCAGGAAATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCGCAATTAGAGCCAGGAGAAGACGAGAGGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTTCAAAACGCGTATAACGCCTTGCGTAATGAA
CAAGGAGGACTTGATTGGGTTGGCATGTCCTCAAGCGAGCTTGAGCAGGTGTCAGAGATCAACGATGATTTGAAGAAGCT
GTCCGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCACCTCCAGACGCT
TAAAAATAAACTGGATGCGATGAGCCGTGATGCTCTGCTTGAAGCACTTAATGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCCAAGCAAATTCAAACGGAGCTCAAGGATTTGTATATGGAGAAGTCAGCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCTTTTGGCAGCACAGATTGTCCGCTTTTAGACGGAAAACCTGTCCAGCTCGGAAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCCGGAGGAGAAATCTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCCAAACAAGACGTCACATCCATTATTTTTGATGAGGTTGATACAGGC
GTCAGCGGCAGAGTCGCACAGGCCATTGCCGAAAAAATTCACAAAGTAGCCGCTGGGTCACAAGTGCTCTGCATTACACA
TCTGCCTCAAGTAGCAGCAATGGCCGACACACATCTTTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACAAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACAGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

76.083

100

0.761