Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PNF30_RS07755 Genome accession   NZ_CP116774
Coordinates   1514305..1514640 (-) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509305..1519640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS07705 (PNF30_07705) comGC 1509516..1509809 (+) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  PNF30_RS07710 (PNF30_07710) comGD 1509802..1510248 (+) 447 WP_272510914.1 competence type IV pilus minor pilin ComGD -
  PNF30_RS07715 (PNF30_07715) comGE 1510232..1510546 (+) 315 WP_111292285.1 competence type IV pilus minor pilin ComGE -
  PNF30_RS07720 (PNF30_07720) comGF 1510458..1510985 (+) 528 WP_186318660.1 competence type IV pilus minor pilin ComGF -
  PNF30_RS07725 (PNF30_07725) - 1510982..1511365 (+) 384 WP_272510915.1 competence type IV pilus minor pilin ComGG -
  PNF30_RS07730 (PNF30_07730) - 1511425..1511619 (+) 195 WP_197198253.1 YqzE family protein -
  PNF30_RS07735 (PNF30_07735) - 1511653..1511931 (-) 279 WP_223251017.1 DUF3889 domain-containing protein -
  PNF30_RS07740 (PNF30_07740) tapA 1512230..1512757 (+) 528 WP_272510916.1 amyloid fiber anchoring/assembly protein TapA -
  PNF30_RS07745 (PNF30_07745) sipW 1512810..1513382 (+) 573 WP_272510917.1 signal peptidase I SipW -
  PNF30_RS07750 (PNF30_07750) tasA 1513437..1514237 (+) 801 WP_111292280.1 biofilm matrix protein TasA -
  PNF30_RS07755 (PNF30_07755) sinR 1514305..1514640 (-) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  PNF30_RS07760 (PNF30_07760) - 1514674..1514838 (-) 165 WP_095408995.1 anti-repressor SinI family protein -
  PNF30_RS07765 (PNF30_07765) - 1515021..1515818 (-) 798 WP_144471088.1 YqhG family protein -
  PNF30_RS07770 (PNF30_07770) - 1515833..1517503 (-) 1671 WP_272510918.1 DEAD/DEAH box helicase -
  PNF30_RS07775 (PNF30_07775) gcvT 1518065..1519162 (+) 1098 WP_095408992.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=780177 PNF30_RS07755 WP_024422969.1 1514305..1514640(-) (sinR) [Bacillus safensis strain SRCM125915]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=780177 PNF30_RS07755 WP_024422969.1 1514305..1514640(-) (sinR) [Bacillus safensis strain SRCM125915]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946