Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   QYT28_RS05665 Genome accession   NZ_CP129556
Coordinates   1179512..1180774 (-) Length   420 a.a.
NCBI ID   WP_000472293.1    Uniprot ID   Q6GG31
Organism   Staphylococcus aureus strain 137G     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174512..1185774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT28_RS05640 (QYT28_05640) - 1174710..1175378 (-) 669 WP_000805946.1 uroporphyrinogen-III synthase -
  QYT28_RS05645 (QYT28_05645) hemC 1175400..1176326 (-) 927 WP_001230225.1 hydroxymethylbilane synthase -
  QYT28_RS05650 (QYT28_05650) ccsA 1176368..1177183 (-) 816 WP_001157326.1 cytochrome c biogenesis protein -
  QYT28_RS05655 (QYT28_05655) hemA 1177205..1178551 (-) 1347 WP_000545456.1 glutamyl-tRNA reductase -
  QYT28_RS05660 (QYT28_05660) yihA 1178768..1179358 (-) 591 WP_000867694.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QYT28_RS05665 (QYT28_05665) clpX 1179512..1180774 (-) 1263 WP_000472293.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QYT28_RS05670 (QYT28_05670) tig 1180925..1182226 (-) 1302 WP_000127572.1 trigger factor -
  QYT28_RS05675 (QYT28_05675) - 1182274..1182384 (-) 111 WP_001790560.1 hypothetical protein -
  QYT28_RS05680 (QYT28_05680) - 1182389..1183318 (-) 930 WP_001280016.1 hypothetical protein -
  QYT28_RS05685 (QYT28_05685) - 1183337..1183945 (-) 609 WP_000032653.1 NUDIX domain-containing protein -
  QYT28_RS05690 (QYT28_05690) rplT 1184087..1184443 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  QYT28_RS05695 (QYT28_05695) rpmI 1184490..1184690 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  QYT28_RS05700 (QYT28_05700) infC 1184719..1185246 (-) 528 WP_001791219.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46279.44 Da        Isoelectric Point: 4.2645

>NTDB_id=780155 QYT28_RS05665 WP_000472293.1 1179512..1180774(-) (clpX) [Staphylococcus aureus strain 137G]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAITELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=780155 QYT28_RS05665 WP_000472293.1 1179512..1180774(-) (clpX) [Staphylococcus aureus strain 137G]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATTACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTGGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
GTTACAAAAAAGTAACATTGCCTTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACATTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACAACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTAGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAATTATACGACGCAGAAGGTAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.917

95

0.636
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531