Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   PNF29_RS19475 Genome accession   NZ_CP116773
Coordinates   3690295..3690693 (+) Length   132 a.a.
NCBI ID   WP_017696126.1    Uniprot ID   A0AAP2LZ45
Organism   Bacillus subtilis strain SRCM125727     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3685295..3695693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS19450 (PNF29_19450) hxlR 3686030..3686392 (-) 363 WP_017696131.1 transcriptional activator HxlR -
  PNF29_RS19455 (PNF29_19455) hxlA 3686624..3687256 (+) 633 WP_017696130.1 3-hexulose-6-phosphate synthase -
  PNF29_RS19460 (PNF29_19460) hxlB 3687262..3687819 (+) 558 WP_017696129.1 6-phospho-3-hexuloisomerase -
  PNF29_RS19465 (PNF29_19465) tlpC 3687930..3689651 (+) 1722 Protein_3825 methyl-accepting chemotaxis protein TlpC -
  PNF29_RS19470 (PNF29_19470) nucA/comI 3689819..3690268 (+) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  PNF29_RS19475 (PNF29_19475) nin/comJ 3690295..3690693 (+) 399 WP_017696126.1 DNA-entry nuclease inhibitor Regulator
  PNF29_RS19480 (PNF29_19480) bglC 3690730..3692163 (-) 1434 WP_017696125.1 6-phospho-beta-glucosidase -
  PNF29_RS19485 (PNF29_19485) yckD 3692317..3692649 (-) 333 WP_015252849.1 YckD family protein -
  PNF29_RS19490 (PNF29_19490) yckC 3692731..3693186 (-) 456 WP_144454062.1 RDD family protein -
  PNF29_RS19495 (PNF29_19495) - 3693205..3693395 (-) 191 Protein_3831 hypothetical protein -
  PNF29_RS19500 (PNF29_19500) yckB 3693558..3694421 (+) 864 WP_072557073.1 transporter substrate-binding domain-containing protein -
  PNF29_RS19505 (PNF29_19505) yckA 3694431..3695111 (+) 681 WP_017696121.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14949.93 Da        Isoelectric Point: 4.8991

>NTDB_id=780144 PNF29_RS19475 WP_017696126.1 3690295..3690693(+) (nin/comJ) [Bacillus subtilis strain SRCM125727]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVSSYEKKVTVPF
HITENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=780144 PNF29_RS19475 WP_017696126.1 3690295..3690693(+) (nin/comJ) [Bacillus subtilis strain SRCM125727]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCACCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAGCTCGTATGAAAAAAAAGTGACTGTTCCTTTT
CATATCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTATCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

97.727

100

0.977