Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PNF29_RS12490 Genome accession   NZ_CP116773
Coordinates   2342293..2343072 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM125727     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2337293..2348072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS12460 (PNF29_12460) fliH 2337311..2338063 (-) 753 WP_186302386.1 flagellar assembly protein FliH -
  PNF29_RS12465 (PNF29_12465) fliG 2338056..2339072 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  PNF29_RS12470 (PNF29_12470) fliF 2339085..2340695 (-) 1611 WP_272515567.1 flagellar basal-body MS-ring/collar protein FliF -
  PNF29_RS12475 (PNF29_12475) fliE 2340741..2341061 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  PNF29_RS12480 (PNF29_12480) flgC 2341072..2341524 (-) 453 WP_017694868.1 flagellar basal body rod protein FlgC -
  PNF29_RS12485 (PNF29_12485) flgB 2341524..2341913 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  PNF29_RS12490 (PNF29_12490) codY 2342293..2343072 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PNF29_RS12495 (PNF29_12495) hslU 2343112..2344515 (-) 1404 WP_041335959.1 HslU--HslV peptidase ATPase subunit -
  PNF29_RS12500 (PNF29_12500) clpQ 2344532..2345077 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  PNF29_RS12505 (PNF29_12505) xerC 2345090..2346004 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  PNF29_RS12510 (PNF29_12510) trmFO 2346072..2347379 (-) 1308 WP_017694866.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=780117 PNF29_RS12490 WP_003220850.1 2342293..2343072(-) (codY) [Bacillus subtilis strain SRCM125727]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=780117 PNF29_RS12490 WP_003220850.1 2342293..2343072(-) (codY) [Bacillus subtilis strain SRCM125727]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAGAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467