Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | PNF29_RS08950 | Genome accession | NZ_CP116773 |
| Coordinates | 1698204..1699241 (+) | Length | 345 a.a. |
| NCBI ID | WP_017696193.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain SRCM125727 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1693204..1704241
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PNF29_RS08925 (PNF29_08925) | rsbRD | 1693424..1694260 (+) | 837 | WP_017696187.1 | RsbT co-antagonist protein RsbRD | - |
| PNF29_RS08930 (PNF29_08930) | yqhB | 1694313..1695641 (-) | 1329 | WP_017696188.1 | hemolysin family protein | - |
| PNF29_RS08935 (PNF29_08935) | corA | 1695783..1696736 (+) | 954 | WP_272516111.1 | magnesium transporter CorA | - |
| PNF29_RS08940 (PNF29_08940) | - | 1696738..1696935 (+) | 198 | WP_272516202.1 | CBS domain-containing protein | - |
| PNF29_RS08945 (PNF29_08945) | comGA | 1697147..1698217 (+) | 1071 | WP_004399124.1 | competence protein ComGA | Machinery gene |
| PNF29_RS08950 (PNF29_08950) | comGB | 1698204..1699241 (+) | 1038 | WP_017696193.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| PNF29_RS08955 (PNF29_08955) | comGC | 1699255..1699551 (+) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
| PNF29_RS08960 (PNF29_08960) | comGD | 1699541..1699972 (+) | 432 | WP_017696194.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| PNF29_RS08965 (PNF29_08965) | comGE | 1699956..1700303 (+) | 348 | WP_017696195.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| PNF29_RS08970 (PNF29_08970) | comGF | 1700329..1700712 (+) | 384 | WP_017696196.1 | ComG operon protein ComGF | Machinery gene |
| PNF29_RS08975 (PNF29_08975) | comGG | 1700713..1701087 (+) | 375 | WP_017696197.1 | ComG operon protein ComGG | Machinery gene |
| PNF29_RS08980 (PNF29_08980) | spoIITA | 1701158..1701337 (+) | 180 | WP_014480252.1 | YqzE family protein | - |
| PNF29_RS08985 (PNF29_08985) | yqzG | 1701379..1701705 (-) | 327 | WP_026113671.1 | YqzG/YhdC family protein | - |
| PNF29_RS08990 (PNF29_08990) | tapA | 1701976..1702737 (+) | 762 | WP_029317916.1 | amyloid fiber anchoring/assembly protein TapA | - |
| PNF29_RS08995 (PNF29_08995) | sipW | 1702721..1703293 (+) | 573 | WP_003230181.1 | signal peptidase I SipW | - |
| PNF29_RS09000 (PNF29_09000) | tasA | 1703357..1704142 (+) | 786 | WP_003230183.1 | biofilm matrix protein TasA | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39998.44 Da Isoelectric Point: 9.8971
>NTDB_id=780104 PNF29_RS08950 WP_017696193.1 1698204..1699241(+) (comGB) [Bacillus subtilis strain SRCM125727]
MKKIRKTWPLKDQARLLKRLGEMTASGYTLLDGLRLMELQMNKKQSADLTDTVTRLREGAPFYQVLKRLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLILFSAGIGIYYWLVFKKKSPARQMLICVRIPFVGKLVRLFNSYFFSLQLSSLLKSGLSIYDSLHAFKHQT
FLPFYRCEAEHVIERLKTGESIEAAICGSPFFETDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLLPMYQMMNQM
MKKIRKTWPLKDQARLLKRLGEMTASGYTLLDGLRLMELQMNKKQSADLTDTVTRLREGAPFYQVLKRLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLILFSAGIGIYYWLVFKKKSPARQMLICVRIPFVGKLVRLFNSYFFSLQLSSLLKSGLSIYDSLHAFKHQT
FLPFYRCEAEHVIERLKTGESIEAAICGSPFFETDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLLPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=780104 PNF29_RS08950 WP_017696193.1 1698204..1699241(+) (comGB) [Bacillus subtilis strain SRCM125727]
ATGAAAAAGATTAGAAAAACCTGGCCGTTAAAGGATCAGGCCCGGTTATTAAAGCGGCTCGGAGAAATGACGGCAAGCGG
ATATACACTTCTGGATGGATTGCGACTGATGGAACTTCAGATGAATAAGAAGCAGTCAGCTGACTTGACTGACACGGTCA
CTCGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTATTAAAGCGTTTGTCATTTCATAAGGAAGCTGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTTGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGGGTGCTGCGCTATCCGCTTTTCCTCATCTTCACCGTTGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAATTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTGATTCTTTTTTCAGCTGGTATCGGGATTTATTACTGGCTTGTGTTTAAGAA
AAAATCACCTGCCAGGCAAATGCTTATTTGTGTCAGGATTCCTTTTGTTGGAAAGCTTGTCAGGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCCATTTATGACAGCCTTCATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCAGAACACGTGATTGAACGGCTAAAAACCGGGGAATCAATTGAAGCTGCTATTTG
TGGGAGCCCTTTTTTTGAAACTGATTTTTCAAAAGTCATATCCCACGGCCAGCTGAGCGGCCGCCTAGATCGTGAGCTTT
TCACATACAGCCAGTTCATATTGCAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCGATGATTTAT
GGATTTGTTGCTGCAATGATCTTACTTGTGTATTTATCTATGCTTTTGCCTATGTATCAGATGATGAATCAAATGTGA
ATGAAAAAGATTAGAAAAACCTGGCCGTTAAAGGATCAGGCCCGGTTATTAAAGCGGCTCGGAGAAATGACGGCAAGCGG
ATATACACTTCTGGATGGATTGCGACTGATGGAACTTCAGATGAATAAGAAGCAGTCAGCTGACTTGACTGACACGGTCA
CTCGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTATTAAAGCGTTTGTCATTTCATAAGGAAGCTGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTTGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGGGTGCTGCGCTATCCGCTTTTCCTCATCTTCACCGTTGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAATTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTGATTCTTTTTTCAGCTGGTATCGGGATTTATTACTGGCTTGTGTTTAAGAA
AAAATCACCTGCCAGGCAAATGCTTATTTGTGTCAGGATTCCTTTTGTTGGAAAGCTTGTCAGGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCCATTTATGACAGCCTTCATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCAGAACACGTGATTGAACGGCTAAAAACCGGGGAATCAATTGAAGCTGCTATTTG
TGGGAGCCCTTTTTTTGAAACTGATTTTTCAAAAGTCATATCCCACGGCCAGCTGAGCGGCCGCCTAGATCGTGAGCTTT
TCACATACAGCCAGTTCATATTGCAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCGATGATTTAT
GGATTTGTTGCTGCAATGATCTTACTTGTGTATTTATCTATGCTTTTGCCTATGTATCAGATGATGAATCAAATGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
93.808 |
93.623 |
0.878 |