Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PNF29_RS05125 Genome accession   NZ_CP116773
Coordinates   999121..999765 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 994121..1004765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS05095 (PNF29_05095) - 994470..994838 (-) 369 WP_017695529.1 hypothetical protein -
  PNF29_RS05100 (PNF29_05100) - 995016..995078 (-) 63 Protein_1016 hypothetical protein -
  PNF29_RS05105 (PNF29_05105) degQ 995300..995440 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  PNF29_RS05110 (PNF29_05110) - 995625..996494 (+) 870 WP_095843911.1 polyprenyl synthetase family protein -
  PNF29_RS05115 (PNF29_05115) comX 996491..996712 (+) 222 WP_014114983.1 competence pheromone ComX -
  PNF29_RS05120 (PNF29_05120) comP 996728..999040 (+) 2313 WP_099085219.1 histidine kinase Regulator
  PNF29_RS05125 (PNF29_05125) comA 999121..999765 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  PNF29_RS05130 (PNF29_05130) yuxO 999784..1000164 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  PNF29_RS05135 (PNF29_05135) mnhG 1000203..1000577 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  PNF29_RS05140 (PNF29_05140) mrpF 1000561..1000845 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  PNF29_RS05145 (PNF29_05145) mrpE 1000845..1001321 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  PNF29_RS05150 (PNF29_05150) mrpD 1001327..1002808 (-) 1482 WP_129137872.1 Na+/H+ antiporter subunit D -
  PNF29_RS05155 (PNF29_05155) mrpC 1002801..1003142 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  PNF29_RS05160 (PNF29_05160) mrpB 1003142..1003573 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=780090 PNF29_RS05125 WP_003220716.1 999121..999765(+) (comA) [Bacillus subtilis strain SRCM125727]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=780090 PNF29_RS05125 WP_003220716.1 999121..999765(+) (comA) [Bacillus subtilis strain SRCM125727]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1