Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   PND17_RS08490 Genome accession   NZ_CP116772
Coordinates   1617520..1618287 (-) Length   255 a.a.
NCBI ID   WP_011226714.1    Uniprot ID   Q5M227
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1612520..1623287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS08470 (PND17_08470) ychF 1613056..1614171 (-) 1116 WP_002948588.1 redox-regulated ATPase YchF -
  PND17_RS08475 (PND17_08475) - 1614384..1614575 (-) 192 WP_002886272.1 DUF951 domain-containing protein -
  PND17_RS08480 (PND17_08480) dnaN 1614626..1615762 (-) 1137 WP_002948931.1 DNA polymerase III subunit beta -
  PND17_RS08485 (PND17_08485) dnaA 1615917..1617281 (-) 1365 WP_002948584.1 chromosomal replication initiator protein DnaA -
  PND17_RS08490 (PND17_08490) spo0J 1617520..1618287 (-) 768 WP_011226714.1 ParB/RepB/Spo0J family partition protein Regulator
  PND17_RS08495 (PND17_08495) htrA 1618353..1619588 (-) 1236 WP_271298447.1 S1C family serine protease Regulator
  PND17_RS08500 (PND17_08500) rlmH 1619793..1620272 (+) 480 WP_002952297.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  PND17_RS08505 (PND17_08505) - 1620288..1620971 (+) 684 WP_164178359.1 YoaK family protein -
  PND17_RS08515 (PND17_08515) - 1621307..1621663 (+) 357 Protein_1661 DDE-type integrase/transposase/recombinase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29485.94 Da        Isoelectric Point: 9.6649

>NTDB_id=780068 PND17_RS08490 WP_011226714.1 1617520..1618287(-) (spo0J) [Streptococcus thermophilus strain strain TSGB 4141]
MSEQLKTLSISEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDELTYSHEELAKAMGKSRPYISNALRLLQLPREIQTSIENGSLSQG
HARALLAIEDSRKQLTIFQQVVAERWSVRTLEKKLQELPRKQKSKKDIHVKDKEKELERLLGLPITLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=780068 PND17_RS08490 WP_011226714.1 1617520..1618287(-) (spo0J) [Streptococcus thermophilus strain strain TSGB 4141]
ATGTCAGAACAACTCAAAACTTTATCTATTAGTGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAATCAATATCAGAAAATGGTTTAATACAGCCAATTATTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGAGTTAACTTATAGTCACGAGGAGCTCGCTAAAGCTATGGGAAAATCTAGACCAT
ATATTAGTAACGCTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCGAAAGCAGTTAACCATCTTTCAGCAGGTTGTGGCTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATATCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATTACTAGGTCTCCCTATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATCTAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(147-196)

ParB/Sulfiredoxin domain (ParB_N)

(8-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M227

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.863

100

0.569