Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PND17_RS02605 Genome accession   NZ_CP116772
Coordinates   498740..499552 (-) Length   270 a.a.
NCBI ID   WP_271298199.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 493740..504552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS02580 (PND17_02580) - 494679..495065 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  PND17_RS02585 (PND17_02585) - 495123..496035 (-) 913 Protein_503 GNAT family N-acetyltransferase -
  PND17_RS02590 (PND17_02590) yidA 496243..497052 (+) 810 WP_011226081.1 sugar-phosphatase -
  PND17_RS02595 (PND17_02595) - 497054..498268 (+) 1215 WP_065973253.1 aminoacyltransferase -
  PND17_RS02600 (PND17_02600) - 498320..498680 (-) 361 Protein_506 YbaN family protein -
  PND17_RS02605 (PND17_02605) vicX 498740..499552 (-) 813 WP_271298199.1 MBL fold metallo-hydrolase Regulator
  PND17_RS02610 (PND17_02610) vicK 499558..500898 (-) 1341 WP_011227273.1 cell wall metabolism sensor histidine kinase VicK Regulator
  PND17_RS02615 (PND17_02615) vicR 500891..501598 (-) 708 WP_173940375.1 response regulator YycF Regulator
  PND17_RS02620 (PND17_02620) - 502125..502892 (+) 768 WP_011227275.1 amino acid ABC transporter ATP-binding protein -
  PND17_RS02625 (PND17_02625) - 502904..503737 (+) 834 WP_232975083.1 transporter substrate-binding domain-containing protein -
  PND17_RS02630 (PND17_02630) - 503755..504453 (+) 699 WP_271298507.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30087.09 Da        Isoelectric Point: 5.5779

>NTDB_id=780028 PND17_RS02605 WP_271298199.1 498740..499552(-) (vicX) [Streptococcus thermophilus strain strain TSGB 4141]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFVTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=780028 PND17_RS02605 WP_271298199.1 498740..499552(-) (vicX) [Streptococcus thermophilus strain strain TSGB 4141]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGCCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGTTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774