Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   PJU73_RS07360 Genome accession   NZ_CP116766
Coordinates   1602986..1603693 (-) Length   235 a.a.
NCBI ID   WP_237091815.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1597986..1608693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS07345 (PJU73_07345) - 1598517..1599431 (-) 915 WP_237091818.1 peptidylprolyl isomerase -
  PJU73_RS07350 (PJU73_07350) - 1599428..1601821 (-) 2394 WP_237091817.1 LPS-assembly protein LptD -
  PJU73_RS07355 (PJU73_07355) amgK 1601892..1602896 (+) 1005 WP_237091816.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  PJU73_RS07360 (PJU73_07360) dsbA1 1602986..1603693 (-) 708 WP_237091815.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  PJU73_RS07365 (PJU73_07365) murJ 1604042..1605580 (+) 1539 WP_237091814.1 murein biosynthesis integral membrane protein MurJ -
  PJU73_RS07370 (PJU73_07370) trpC 1605706..1606488 (-) 783 WP_237091813.1 indole-3-glycerol phosphate synthase TrpC -
  PJU73_RS07375 (PJU73_07375) - 1606770..1607747 (-) 978 WP_237091812.1 YheT family hydrolase -
  PJU73_RS07380 (PJU73_07380) - 1607829..1608644 (-) 816 WP_237091811.1 molybdopterin-binding protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25713.34 Da        Isoelectric Point: 5.3662

>NTDB_id=780005 PJU73_RS07360 WP_237091815.1 1602986..1603693(-) (dsbA1) [Neisseria lisongii strain ZJ106]
MKLKTVSLLTAGLFALAACGGKTESSVPAEAASAPSASAPAPVAPSGLVEGQNYTVLDNPIAQQQADKVEVLEFFGYFCP
HCAHLEPVLSQHVKTFKDDTYLRSEHVVWDEAMKPLARLSAAVDMAGQRAAADHLIFDTVVHRKIEWENSDVLKKWLDEQ
TEFDGKKVLAAFESPESAKRADEMEKLVMAHQIASTPTVIVGGKYVVKFSDWESGMNTIDLLVDKVREEQKAAKK

Nucleotide


Download         Length: 708 bp        

>NTDB_id=780005 PJU73_RS07360 WP_237091815.1 1602986..1603693(-) (dsbA1) [Neisseria lisongii strain ZJ106]
ATGAAGTTAAAAACCGTTTCCCTGCTCACCGCCGGCCTGTTTGCCTTGGCAGCCTGCGGCGGCAAAACCGAATCTAGCGT
ACCGGCCGAAGCGGCCTCCGCCCCGAGCGCTTCCGCTCCTGCGCCCGTTGCCCCTTCGGGTTTGGTCGAAGGGCAAAACT
ATACCGTGTTGGATAACCCGATTGCCCAGCAGCAGGCGGACAAAGTCGAAGTGTTGGAATTTTTCGGCTATTTCTGCCCG
CATTGCGCCCACTTGGAGCCGGTGTTGAGCCAACACGTCAAAACCTTTAAAGACGATACCTATCTGCGTTCTGAACACGT
GGTATGGGACGAAGCCATGAAACCGCTGGCACGCCTGTCGGCCGCCGTGGATATGGCGGGCCAGCGTGCCGCCGCCGATC
ATTTGATTTTTGATACGGTTGTCCATCGTAAAATTGAATGGGAAAACTCTGACGTTTTGAAAAAATGGCTGGACGAACAA
ACCGAATTTGACGGCAAAAAAGTACTGGCCGCCTTTGAATCGCCTGAAAGCGCCAAACGTGCCGACGAAATGGAAAAACT
GGTGATGGCACACCAAATCGCCAGCACCCCGACTGTGATTGTCGGCGGCAAATATGTGGTGAAATTCAGCGACTGGGAAT
CAGGCATGAACACCATCGATCTGCTGGTGGACAAAGTGCGTGAAGAACAGAAAGCGGCGAAAAAATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(66-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

65.254

100

0.655
  dsbA2 Neisseria meningitidis MC58

71.196

78.298

0.557