Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PJU73_RS05760 Genome accession   NZ_CP116766
Coordinates   1270491..1271300 (+) Length   269 a.a.
NCBI ID   WP_237091420.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1265491..1276300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS05730 (PJU73_05730) - 1265745..1266257 (-) 513 WP_237091414.1 RDD family protein -
  PJU73_RS05735 (PJU73_05735) - 1266474..1266893 (-) 420 WP_237091415.1 hypothetical protein -
  PJU73_RS05740 (PJU73_05740) holA 1266999..1267994 (-) 996 WP_237091416.1 DNA polymerase III subunit delta -
  PJU73_RS05745 (PJU73_05745) lptE 1267994..1268473 (-) 480 WP_237091417.1 LPS assembly lipoprotein LptE -
  PJU73_RS05750 (PJU73_05750) pgeF 1268525..1269304 (-) 780 WP_237091418.1 peptidoglycan editing factor PgeF -
  PJU73_RS05755 (PJU73_05755) rluD 1269368..1270492 (-) 1125 WP_237091419.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PJU73_RS05760 (PJU73_05760) comL 1270491..1271300 (+) 810 WP_237091420.1 outer membrane protein assembly factor BamD Machinery gene
  PJU73_RS05765 (PJU73_05765) - 1271464..1272768 (-) 1305 WP_237091421.1 MFS transporter -
  PJU73_RS05770 (PJU73_05770) argE 1272919..1274082 (+) 1164 WP_237091422.1 acetylornithine deacetylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31149.27 Da        Isoelectric Point: 8.9145

>NTDB_id=779999 PJU73_RS05760 WP_237091420.1 1270491..1271300(+) (comL) [Neisseria lisongii strain ZJ106]
MKKILLVVSLSVALAACANTQKGTVDKDAQITQDWSVEQLYAEAQDELNSHNYTRAVKLYEILESRFPSSRHSQHSLLDT
AYAYYKDGEREKALATIARFQRQYPQHPNMDYALYLQGLTAFNEDQSFLNKLASQDWADRDPKANLEAYRVFAQLVAQYP
DSKYTPDAVVRMAKLVDALAGNEMAVARYYLKRGAYIAASSRAQKIVQRYQNTRFVEEALAMMELSYKKLGKPQLAEDTR
RVLAHNFPNSPFLQHDWKPDDMPWWRYWK

Nucleotide


Download         Length: 810 bp        

>NTDB_id=779999 PJU73_RS05760 WP_237091420.1 1270491..1271300(+) (comL) [Neisseria lisongii strain ZJ106]
ATGAAAAAAATTCTTTTAGTAGTTTCTCTAAGTGTCGCACTCGCTGCCTGCGCCAATACGCAAAAAGGCACAGTCGATAA
AGATGCCCAAATTACTCAGGATTGGAGTGTAGAACAACTCTATGCAGAAGCGCAAGACGAACTGAACAGCCACAATTATA
CCCGTGCCGTCAAACTCTACGAAATTTTGGAATCCCGCTTCCCGAGCAGCCGCCATTCGCAGCACTCGTTGCTGGATACT
GCCTATGCCTATTATAAAGACGGCGAACGTGAAAAAGCGCTGGCCACGATTGCCCGCTTCCAGCGCCAGTATCCGCAGCA
CCCGAATATGGACTACGCCCTCTATCTGCAAGGTCTGACCGCTTTCAATGAAGACCAATCCTTCCTCAACAAGCTCGCCT
CGCAAGACTGGGCCGACCGCGACCCGAAAGCCAACTTGGAAGCCTACCGTGTTTTTGCGCAACTGGTGGCACAATACCCC
GACAGCAAATACACGCCCGATGCCGTCGTCCGCATGGCCAAACTGGTTGACGCACTGGCCGGCAACGAAATGGCGGTTGC
CCGCTATTATCTGAAACGGGGTGCCTATATCGCCGCCTCGAGCCGGGCCCAAAAAATCGTCCAACGCTACCAAAACACCC
GCTTTGTCGAAGAAGCGCTGGCGATGATGGAACTCTCATACAAAAAACTCGGCAAACCCCAGCTTGCCGAAGACACCCGC
CGTGTGTTGGCACACAACTTCCCCAACAGCCCGTTTCTGCAACACGATTGGAAACCGGACGATATGCCTTGGTGGCGCTA
CTGGAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(36-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

76.493

99.628

0.762
  comL Neisseria meningitidis MC58

76.493

99.628

0.762