Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   PJU73_RS05320 Genome accession   NZ_CP116766
Coordinates   1186744..1187211 (+) Length   155 a.a.
NCBI ID   WP_237091539.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181744..1192211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS05305 (PJU73_05305) - 1183066..1184355 (-) 1290 WP_237091532.1 ATP-binding protein -
  PJU73_RS05310 (PJU73_05310) - 1184650..1185867 (+) 1218 WP_237091531.1 aspartate kinase -
  PJU73_RS05315 (PJU73_05315) - 1185936..1186649 (+) 714 WP_237091530.1 phosphoglycolate phosphatase -
  PJU73_RS05320 (PJU73_05320) recX 1186744..1187211 (+) 468 WP_237091539.1 recombination regulator RecX Regulator
  PJU73_RS05325 (PJU73_05325) - 1187457..1188200 (+) 744 WP_237091529.1 pseudouridine synthase -
  PJU73_RS05330 (PJU73_05330) - 1188267..1189724 (-) 1458 WP_237091528.1 TrkH family potassium uptake protein -
  PJU73_RS05335 (PJU73_05335) - 1190077..1190352 (+) 276 WP_237091527.1 type B 50S ribosomal protein L31 -
  PJU73_RS05340 (PJU73_05340) ykgO 1190352..1190477 (+) 126 WP_237091526.1 type B 50S ribosomal protein L36 -
  PJU73_RS05345 (PJU73_05345) - 1190589..1191020 (-) 432 WP_237091525.1 cyclophilin-like fold protein -
  PJU73_RS05350 (PJU73_05350) - 1191030..1191587 (-) 558 WP_237091524.1 sugar O-acetyltransferase -
  PJU73_RS05355 (PJU73_05355) greB 1191674..1192165 (-) 492 WP_237091538.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 18063.48 Da        Isoelectric Point: 10.2854

>NTDB_id=779996 PJU73_RS05320 WP_237091539.1 1186744..1187211(+) (recX) [Neisseria lisongii strain ZJ106]
MNRHTPKPTKSLRARAMDILSRQEISRSGLKKKLAPYAENEAELEAVLNEFAEQGWQSNSRYAEAYIHSKSARHGKNRLK
QALAQQGIDPDISRHLLPDRETERRNAVNVLQKKFKHPAQDLKEKQKQIRFLAYRGFDMNTIQAALKCDWDEDFF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=779996 PJU73_RS05320 WP_237091539.1 1186744..1187211(+) (recX) [Neisseria lisongii strain ZJ106]
ATGAACCGCCACACCCCCAAACCCACCAAATCCCTGCGCGCCAGAGCCATGGACATACTCTCCCGCCAAGAAATCAGCCG
CAGCGGTCTCAAAAAAAAACTCGCCCCCTACGCTGAAAACGAAGCCGAATTAGAAGCCGTATTAAACGAATTTGCCGAAC
AAGGCTGGCAATCCAACAGCCGCTATGCCGAAGCCTATATCCACAGCAAATCCGCCCGCCACGGCAAAAACCGCCTCAAA
CAAGCCCTTGCCCAACAAGGCATAGACCCCGACATCAGCCGCCACCTCCTGCCCGACAGAGAAACCGAACGGCGAAACGC
CGTCAATGTCTTGCAGAAAAAATTCAAACACCCCGCCCAAGACCTCAAAGAAAAACAAAAACAAATCCGCTTCCTCGCCT
ACCGGGGCTTCGATATGAACACCATACAGGCCGCCCTCAAATGCGATTGGGACGAAGATTTTTTCTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(40-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

72.973

95.484

0.697