Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   PJU73_RS05370 Genome accession   NZ_CP116766
Coordinates   1194416..1195426 (-) Length   336 a.a.
NCBI ID   WP_237091521.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 1189416..1200426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS05335 (PJU73_05335) - 1190077..1190352 (+) 276 WP_237091527.1 type B 50S ribosomal protein L31 -
  PJU73_RS05340 (PJU73_05340) ykgO 1190352..1190477 (+) 126 WP_237091526.1 type B 50S ribosomal protein L36 -
  PJU73_RS05345 (PJU73_05345) - 1190589..1191020 (-) 432 WP_237091525.1 cyclophilin-like fold protein -
  PJU73_RS05350 (PJU73_05350) - 1191030..1191587 (-) 558 WP_237091524.1 sugar O-acetyltransferase -
  PJU73_RS05355 (PJU73_05355) greB 1191674..1192165 (-) 492 WP_237091538.1 transcription elongation factor GreB -
  PJU73_RS05360 (PJU73_05360) purF 1192259..1193794 (-) 1536 WP_237091523.1 amidophosphoribosyltransferase -
  PJU73_RS05365 (PJU73_05365) - 1193917..1194423 (-) 507 WP_237091522.1 CvpA family protein -
  PJU73_RS05370 (PJU73_05370) tpc 1194416..1195426 (-) 1011 WP_237091521.1 cell division protein FtsN Machinery gene
  PJU73_RS05375 (PJU73_05375) folC 1195453..1196721 (-) 1269 WP_237091520.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  PJU73_RS05380 (PJU73_05380) - 1196853..1197269 (-) 417 WP_237091519.1 protein YgfX -
  PJU73_RS05385 (PJU73_05385) - 1197272..1197631 (-) 360 WP_237091518.1 hypothetical protein -
  PJU73_RS05390 (PJU73_05390) - 1197702..1198430 (-) 729 WP_237091517.1 amino acid ABC transporter ATP-binding protein -
  PJU73_RS05395 (PJU73_05395) rsmA 1198469..1199248 (-) 780 WP_237091537.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  PJU73_RS05400 (PJU73_05400) - 1199348..1199950 (-) 603 WP_237091516.1 nucleoside triphosphate pyrophosphatase -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 36026.65 Da        Isoelectric Point: 10.2110

>NTDB_id=779997 PJU73_RS05370 WP_237091521.1 1194416..1195426(-) (tpc) [Neisseria lisongii strain ZJ106]
MSDEKKLDLEGYEALKRSNRRRLFIVSGAVAAAVLTLLAVNSGNEDTPPQKAVVVQEGKQPSEPSAKPSENGNKAETAAA
TPKAAPSDSVEILKPETIAPPEDVGAPLVIEDDKLADSNIKGLEESEKLQEIEAAKAAEAARAAEERSRRIAEQRAARKA
EQRKAAEAKEAEQKRIARNEKAAAERKAKQADAKQEAAAKAKREAAKAKEKETAAAERRKAEKDSEAAQVKAKAKTETAA
ADKKKADKPSENKAKTAEKTTGGKAAIQAGYAEKERALSLQKKMKAAGINAGIIAIPTDKGTVYRVKSEPYKNAREAERD
LNKLRVHGIAGQITRE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=779997 PJU73_RS05370 WP_237091521.1 1194416..1195426(-) (tpc) [Neisseria lisongii strain ZJ106]
ATGTCAGACGAGAAAAAATTAGATTTGGAGGGTTATGAAGCCCTCAAACGCAGCAACCGCCGCCGTTTGTTTATCGTTTC
CGGTGCGGTTGCCGCCGCTGTGCTGACGCTGCTTGCCGTGAACAGCGGCAACGAAGACACGCCGCCGCAAAAAGCAGTGG
TAGTGCAGGAAGGAAAACAGCCGTCCGAACCGTCGGCGAAGCCGTCTGAAAATGGAAACAAAGCCGAAACGGCAGCCGCA
ACGCCGAAGGCAGCGCCGTCTGATTCAGTGGAAATCCTGAAACCGGAAACCATCGCCCCGCCGGAAGACGTGGGCGCACC
GCTGGTGATTGAAGACGACAAACTGGCCGACAGCAACATTAAAGGCTTGGAAGAATCGGAAAAACTGCAGGAAATCGAAG
CGGCTAAAGCAGCGGAAGCCGCTCGTGCCGCCGAAGAGCGCAGCCGTCGGATTGCCGAGCAGCGTGCCGCCCGTAAAGCC
GAACAGCGTAAAGCGGCTGAGGCCAAAGAAGCCGAGCAGAAACGGATTGCCCGCAACGAAAAAGCCGCCGCCGAGCGCAA
GGCAAAACAGGCAGATGCTAAACAGGAAGCCGCCGCCAAAGCCAAGCGTGAAGCCGCTAAAGCCAAAGAAAAAGAAACCG
CCGCTGCAGAACGCAGAAAAGCAGAAAAAGACAGCGAAGCGGCGCAAGTAAAAGCCAAAGCGAAAACCGAAACTGCCGCT
GCGGATAAGAAAAAAGCAGACAAGCCGTCTGAAAACAAGGCCAAAACCGCCGAGAAAACCACAGGCGGCAAAGCAGCGAT
TCAGGCCGGTTACGCCGAAAAAGAGCGTGCTTTGAGCCTGCAGAAAAAAATGAAGGCGGCGGGCATCAATGCCGGCATTA
TCGCCATTCCGACCGACAAAGGCACGGTATATCGGGTCAAATCCGAGCCGTATAAAAATGCCCGTGAAGCAGAACGTGAT
TTGAACAAGTTGCGGGTTCACGGCATTGCGGGGCAGATTACCCGTGAATAG

Domains


Predicted by InterproScan.

(263-334)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

46.757

100

0.515