Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QY866_RS09975 Genome accession   NZ_CP129530
Coordinates   1957239..1957835 (-) Length   198 a.a.
NCBI ID   WP_011374047.1    Uniprot ID   Q38YT8
Organism   Latilactobacillus sakei strain A1262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1952239..1962835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS09940 (QY866_09930) - 1952701..1953447 (-) 747 WP_025016440.1 acyl-ACP thioesterase domain-containing protein -
  QY866_RS09945 (QY866_09935) rsmI 1953458..1954336 (-) 879 WP_011374053.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QY866_RS09950 (QY866_09940) - 1954435..1954788 (-) 354 WP_011374052.1 DNA replication initiation control protein YabA -
  QY866_RS09955 (QY866_09945) holB 1954840..1955832 (-) 993 WP_025016439.1 DNA polymerase III subunit delta' -
  QY866_RS09960 (QY866_09950) - 1955836..1956165 (-) 330 WP_011374050.1 cyclic-di-AMP receptor -
  QY866_RS09965 (QY866_09955) tmk 1956180..1956824 (-) 645 WP_341843953.1 dTMP kinase -
  QY866_RS09970 (QY866_09960) - 1956968..1957222 (-) 255 WP_011374048.1 YaaL family protein -
  QY866_RS09975 (QY866_09965) recR 1957239..1957835 (-) 597 WP_011374047.1 recombination mediator RecR Machinery gene
  QY866_RS09980 (QY866_09970) - 1957861..1958169 (-) 309 WP_056947773.1 YbaB/EbfC family nucleoid-associated protein -
  QY866_RS09985 (QY866_09975) dnaX 1958196..1959914 (-) 1719 WP_251945168.1 DNA polymerase III subunit gamma/tau -
  QY866_RS09995 (QY866_09985) tadA 1960339..1960857 (-) 519 WP_035147305.1 tRNA adenosine(34) deaminase TadA -
  QY866_RS10000 (QY866_09990) - 1960938..1961282 (-) 345 WP_016264616.1 hypothetical protein -
  QY866_RS10005 (QY866_09995) - 1961355..1961960 (-) 606 WP_085391630.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22051.38 Da        Isoelectric Point: 5.1115

>NTDB_id=779925 QY866_RS09975 WP_011374047.1 1957239..1957835(-) (recR) [Latilactobacillus sakei strain A1262]
MQYPEPIAKLIESYMKLPGIGNKTATRLAFYTIDMNEDDVTNFAKNLISARRDLHYCSVCGNITDEDPCEICRDTARSQE
MILVVEQPKDVMSMERMNDYHGLYHVLHGVLSPIEGKGPDDINIANLIKRLQKTPAKEVIIATNATPEGEATAMYISRLI
KPAGIKVTRLAHGLAVGSDIEYADEMTLLKAVEGRQEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=779925 QY866_RS09975 WP_011374047.1 1957239..1957835(-) (recR) [Latilactobacillus sakei strain A1262]
ATGCAATATCCAGAACCAATTGCGAAGTTGATCGAAAGTTATATGAAGTTACCAGGCATTGGTAACAAAACAGCAACGCG
ATTAGCTTTTTATACGATTGATATGAATGAAGATGACGTGACTAACTTTGCCAAGAATCTGATTTCAGCACGCCGAGACC
TCCATTATTGTAGTGTCTGTGGCAATATCACTGATGAAGATCCTTGTGAGATTTGTCGGGATACCGCGCGTAGTCAGGAA
ATGATTTTGGTGGTCGAACAACCTAAAGATGTGATGTCGATGGAACGGATGAACGATTATCACGGTCTCTATCACGTCTT
GCACGGGGTGTTGTCACCAATTGAAGGTAAAGGGCCAGACGATATTAATATTGCTAATTTAATTAAACGACTCCAAAAAA
CACCAGCTAAAGAAGTCATCATCGCCACCAATGCAACGCCAGAAGGGGAAGCAACGGCGATGTATATTTCACGGCTAATT
AAGCCGGCCGGGATTAAAGTCACTCGCTTAGCCCATGGTTTAGCGGTCGGGAGCGATATTGAATATGCGGATGAGATGAC
TTTATTAAAAGCTGTCGAGGGTCGTCAAGAAATCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

66.667

100

0.667
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.98

100

0.48