Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   QY866_RS06200 Genome accession   NZ_CP129530
Coordinates   1237028..1238281 (+) Length   417 a.a.
NCBI ID   WP_011374761.1    Uniprot ID   Q38WR9
Organism   Latilactobacillus sakei strain A1262     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232028..1243281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS06185 (QY866_06175) - 1232952..1233899 (+) 948 WP_341843918.1 hypothetical protein -
  QY866_RS06190 (QY866_06180) tuf 1234122..1235312 (+) 1191 WP_056946674.1 elongation factor Tu -
  QY866_RS06195 (QY866_06185) tig 1235523..1236818 (+) 1296 WP_011374762.1 trigger factor -
  QY866_RS06200 (QY866_06190) clpX 1237028..1238281 (+) 1254 WP_011374761.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QY866_RS06205 (QY866_06195) yihA 1238429..1239028 (+) 600 WP_011374760.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QY866_RS06210 (QY866_06200) - 1239028..1239321 (+) 294 WP_011374759.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  QY866_RS06215 (QY866_06205) - 1239396..1239548 (-) 153 WP_011374758.1 SPJ_0845 family protein -
  QY866_RS06220 (QY866_06210) - 1239683..1241146 (+) 1464 WP_035148462.1 ABC transporter substrate-binding protein/permease -
  QY866_RS06225 (QY866_06215) - 1241139..1241870 (+) 732 WP_056946671.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45644.28 Da        Isoelectric Point: 4.3589

>NTDB_id=779890 QY866_RS06200 WP_011374761.1 1237028..1238281(+) (clpX) [Latilactobacillus sakei strain A1262]
MLDDTETTNGPVTCSFCGKSQDQVKKIVAGPGVYICNECIDLCKEIIDEEFKDEAVNDLLEVPKPREILAILNDYVIGQT
EAKKALSVAVYNHYKRVNQMTVAEKGDTELQKSNIALIGPTGSGKTFLAQTLARILNVPFAIADATTLTEAGYVGEDVEN
ILLKLLQNADFDVDRAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIQIDT
TNILFIIGGAFDGIETIVKNRLGEKTIGFGSKAGQAVDENQSLMQQIVTEDLMQFGIIPEFIGRIPITAALEKLTEDDLV
RILTEPKNALVKQYSKLMALDDVELEFTPEALHAIAHLAIERNTGARGLRSIIEEVMMDMMFDVPSREDVVKVLVTKEAV
DGTAKPQLFLADGQEAS

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=779890 QY866_RS06200 WP_011374761.1 1237028..1238281(+) (clpX) [Latilactobacillus sakei strain A1262]
ATGTTAGATGATACAGAAACAACGAATGGCCCTGTTACTTGTTCGTTTTGTGGTAAATCACAAGATCAAGTAAAGAAGAT
TGTGGCCGGCCCTGGTGTTTATATCTGTAACGAATGTATCGATCTCTGTAAAGAAATTATCGATGAAGAATTTAAAGATG
AAGCTGTTAATGACTTATTAGAAGTACCAAAACCACGCGAAATTCTTGCAATTTTAAATGATTATGTCATTGGTCAAACA
GAAGCTAAAAAGGCGCTCTCAGTTGCCGTTTATAACCATTACAAACGTGTTAACCAAATGACGGTTGCCGAAAAAGGTGA
TACTGAACTTCAAAAGAGTAATATCGCTTTAATCGGGCCTACTGGCTCAGGTAAGACATTCTTAGCCCAAACCTTAGCAC
GGATCCTCAACGTTCCATTTGCGATTGCAGATGCCACGACGTTGACGGAAGCTGGTTATGTTGGTGAAGATGTTGAGAAC
ATTCTCTTGAAGCTCTTGCAAAACGCTGATTTTGATGTTGATCGCGCTGAACGTGGCATTATTTATATCGATGAAATTGA
TAAGATTGCCAAGAAGAGCGAAAACGTCTCAATTACCCGTGATGTTTCTGGTGAAGGGGTGCAACAAGCACTTTTGAAGA
TTCTTGAAGGGACAATTGCTAGCGTGCCACCTCAGGGCGGACGTAAGCACCCACAACAAGAATTGATTCAAATCGACACA
ACCAATATTTTATTCATTATTGGTGGGGCCTTTGATGGCATCGAAACAATCGTTAAAAACCGTTTAGGTGAAAAGACGAT
TGGTTTTGGTAGCAAAGCTGGCCAAGCGGTTGATGAAAATCAAAGCTTGATGCAACAAATCGTGACGGAAGATTTAATGC
AATTTGGGATTATCCCTGAATTCATTGGTCGGATTCCAATCACGGCTGCACTTGAAAAATTAACTGAAGACGACTTAGTT
CGGATCTTAACGGAACCTAAGAACGCCTTAGTTAAACAATATAGCAAATTGATGGCTTTAGACGATGTTGAACTAGAATT
CACGCCAGAGGCATTACATGCGATTGCTCACCTTGCAATTGAACGTAATACCGGTGCGCGTGGTCTCCGTTCAATCATCG
AAGAAGTCATGATGGATATGATGTTTGATGTACCAAGTCGCGAAGACGTTGTCAAAGTCTTAGTGACAAAAGAAGCCGTT
GATGGCACTGCTAAACCACAACTTTTCTTAGCTGATGGTCAAGAAGCGTCATAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(314-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(13-49)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38WR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

72.139

96.403

0.695
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.531

97.122

0.559