Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QY867_RS05745 Genome accession   NZ_CP129529
Coordinates   1131525..1133303 (+) Length   592 a.a.
NCBI ID   WP_016265206.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126525..1138303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS05715 (QY867_05700) clpX 1126603..1127856 (+) 1254 WP_011374761.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QY867_RS05720 (QY867_05705) yihA 1128004..1128603 (+) 600 WP_011374760.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QY867_RS05725 (QY867_05710) - 1128603..1128896 (+) 294 WP_011374759.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  QY867_RS05730 (QY867_05715) - 1128971..1129123 (-) 153 WP_011374758.1 SPJ_0845 family protein -
  QY867_RS05735 (QY867_05720) - 1129258..1130721 (+) 1464 WP_035148462.1 ABC transporter substrate-binding protein/permease -
  QY867_RS05740 (QY867_05725) - 1130714..1131445 (+) 732 WP_056946671.1 amino acid ABC transporter ATP-binding protein -
  QY867_RS05745 (QY867_05730) uvrC 1131525..1133303 (+) 1779 WP_016265206.1 excinuclease ABC subunit UvrC Machinery gene
  QY867_RS05750 (QY867_05735) - 1133337..1133918 (-) 582 WP_011374754.1 TetR/AcrR family transcriptional regulator -
  QY867_RS05755 (QY867_05740) - 1134031..1135059 (+) 1029 WP_056946668.1 aldehyde reductase -
  QY867_RS05760 (QY867_05745) - 1135190..1136029 (+) 840 WP_056946665.1 YitT family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 67778.35 Da        Isoelectric Point: 9.6587

>NTDB_id=779806 QY867_RS05745 WP_016265206.1 1131525..1133303(+) (uvrC) [Latilactobacillus sakei strain A1291]
MASEHIEHKLALLPALPGCYLMKDINAQIIYVGKAKNLKNRVRSYFKSSHEGKTAKLVSEIVDFETIITSTNKEAFLLEI
TLIQKHQPYFNIKLKRGTGYPYIKITNERDPRLLITGDVKKDGGYYFGPYPDVYAAQETLRFLQRVYPLRRCQGHQGRPC
LYYHMGQCLGACFQEVPEAAYTEQIKKIKRFLNGQVDNVKKDLTEKMATAAQEMQFERAAELRDQLRYIEATVEKQKIIS
NDHTPRDLFAFYMDKGWLSIQIFFIRQARLIRREKRLFPCVNTPEEELATFILQWYNRKNNVLPREILVPDGIEKQVLSD
ILQVPIRTPQRGEKKALMEMAQKNSRLVLEEKFRLLELDNRKTVGAQDEIMDALGLPHGHVIEAFDHSHIQGTDPVSAMV
TFVDGRAEKKLYRKYKLTQTAERAGANEDANTREVIYRRYSRLLKEGKALPDLILMDGGVVELNAAKDVLENELGLTIPV
AGMVKDNHHKTASLLFGEADQTIQLDPKSQGFYLLTRIQDEVHRFAISFHRQLRGKNSLSSKLDDIKGVGPKTRTKLLKN
FGSMKHIKDASVEELEALGISKTVAQTIKLSL

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=779806 QY867_RS05745 WP_016265206.1 1131525..1133303(+) (uvrC) [Latilactobacillus sakei strain A1291]
TTGGCAAGTGAACATATCGAACATAAATTAGCCTTATTACCAGCCTTACCAGGCTGTTATTTGATGAAAGATATTAACGC
ACAGATTATCTACGTGGGGAAGGCCAAGAATCTTAAGAACCGGGTCCGCTCGTATTTTAAGAGTAGCCACGAAGGTAAGA
CGGCCAAATTGGTCTCTGAAATTGTCGATTTTGAAACAATCATTACATCGACAAATAAAGAGGCCTTTTTGTTGGAAATT
ACGTTAATCCAAAAGCACCAACCCTACTTTAATATCAAGTTAAAACGGGGGACGGGCTATCCGTACATCAAGATCACCAA
TGAACGTGATCCGCGCTTATTGATTACTGGCGATGTCAAAAAAGATGGTGGCTATTATTTTGGCCCGTATCCGGACGTTT
ATGCGGCTCAGGAGACTTTACGCTTCTTGCAACGTGTTTACCCCTTGCGGCGCTGTCAGGGTCATCAAGGACGTCCTTGT
TTGTACTATCATATGGGGCAGTGCTTGGGGGCTTGCTTCCAAGAAGTACCAGAAGCAGCCTATACCGAACAGATTAAGAA
AATTAAACGCTTTTTAAATGGGCAAGTCGACAATGTTAAGAAGGATTTAACGGAGAAAATGGCGACGGCTGCCCAGGAGA
TGCAATTTGAGCGGGCCGCTGAGTTGCGTGATCAATTACGCTATATTGAAGCAACCGTTGAAAAACAAAAGATTATTTCT
AACGATCATACACCGCGTGATTTATTTGCCTTTTACATGGATAAAGGCTGGTTGTCGATTCAAATCTTCTTTATTCGCCA
AGCACGTTTAATTCGGCGGGAAAAACGTCTCTTCCCATGTGTGAATACGCCGGAAGAAGAATTGGCGACCTTTATTCTCC
AGTGGTATAACCGTAAGAATAATGTGTTACCACGGGAAATTCTCGTGCCAGATGGGATCGAAAAGCAAGTCTTATCCGAT
ATTTTGCAAGTACCAATTCGAACGCCACAACGGGGAGAGAAAAAAGCCTTGATGGAAATGGCGCAAAAAAATAGCCGTCT
GGTATTAGAAGAAAAGTTCCGCTTATTGGAACTCGATAATCGCAAGACGGTTGGTGCGCAAGATGAAATTATGGATGCAC
TCGGCTTACCCCATGGTCATGTTATCGAAGCATTCGATCATTCGCATATTCAAGGGACCGATCCGGTGTCGGCGATGGTC
ACATTTGTTGATGGCCGCGCTGAGAAGAAGCTTTATCGGAAGTATAAATTAACCCAGACGGCAGAGCGCGCCGGCGCCAA
CGAAGATGCCAATACGCGCGAGGTGATCTATCGCCGTTATTCACGCTTGCTAAAAGAGGGCAAAGCGCTGCCTGACTTAA
TTTTAATGGATGGTGGGGTAGTTGAACTCAATGCCGCCAAAGACGTCTTAGAAAACGAACTAGGGCTCACAATTCCAGTT
GCGGGGATGGTTAAGGATAATCACCATAAAACAGCTTCGTTATTATTTGGTGAAGCCGATCAAACGATTCAGCTTGATCC
TAAGAGTCAGGGCTTTTACTTATTGACGCGAATTCAAGATGAAGTCCATCGCTTTGCGATTAGTTTTCACCGCCAGTTAC
GTGGTAAGAATTCGTTGAGTTCTAAGTTAGATGATATCAAGGGGGTTGGTCCGAAAACGCGGACGAAACTCTTGAAGAAT
TTTGGCTCGATGAAGCATATTAAAGATGCGTCTGTTGAAGAACTTGAAGCACTCGGAATATCGAAGACAGTTGCGCAAAC
CATTAAATTATCACTATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-527)

UvrB/uvrC motif (UVR)

(197-231)

Helix-hairpin-helix domain (HHH_5)

(542-592)

GIY-YIG catalytic domain (GIY-YIG)

(18-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

50.767

99.155

0.503
  uvrC Streptococcus pneumoniae R6

50.426

99.155

0.5
  uvrC Streptococcus pneumoniae D39

50.426

99.155

0.5