Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   QY867_RS04615 Genome accession   NZ_CP129529
Coordinates   906103..906717 (-) Length   204 a.a.
NCBI ID   WP_011374972.1    Uniprot ID   Q38W54
Organism   Latilactobacillus sakei strain A1291     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 901103..911717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS04590 (QY867_04585) - 901184..901510 (-) 327 WP_337457512.1 heavy metal-binding domain-containing protein -
  QY867_RS04595 (QY867_04590) - 901527..901892 (-) 366 WP_011374976.1 DUF1304 domain-containing protein -
  QY867_RS04600 (QY867_04595) galE 901978..902970 (-) 993 WP_035146095.1 UDP-glucose 4-epimerase GalE -
  QY867_RS04605 (QY867_04600) recJ 903115..905427 (+) 2313 WP_341843897.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QY867_RS04610 (QY867_04605) - 905451..905969 (+) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  QY867_RS04615 (QY867_04610) dinR/lexA 906103..906717 (-) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  QY867_RS04620 (QY867_04615) - 906852..907094 (+) 243 WP_011374971.1 DUF896 domain-containing protein -
  QY867_RS04625 (QY867_04620) - 907175..907405 (+) 231 WP_011374970.1 YneF family protein -
  QY867_RS04630 (QY867_04625) - 907547..909292 (+) 1746 WP_341843898.1 ABC transporter transmembrane domain-containing protein -
  QY867_RS04635 (QY867_04630) - 909294..911084 (+) 1791 WP_337457514.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22567.96 Da        Isoelectric Point: 4.9705

>NTDB_id=779793 QY867_RS04615 WP_011374972.1 906103..906717(-) (dinR/lexA) [Latilactobacillus sakei strain A1291]
MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDPTKPRAIELTPAGLTAIGATP
QKIPVLGVVTAGVPILAVEEATDYFPLPPSLQTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIAMTAEDE
ATCKRFFKEADHYRLQPENDTFEPIILNEVSILGKVVGLYRDRM

Nucleotide


Download         Length: 615 bp        

>NTDB_id=779793 QY867_RS04615 WP_011374972.1 906103..906717(-) (dinR/lexA) [Latilactobacillus sakei strain A1291]
ATGACTAAAACTGAATCCAAACAATTAGAGGTCTTACGTTTTATTCACGAACGTGTTCAAGACAAAGGTTACCCACCAAC
GGTCCGCGAGATTTGCGAAGCCGTTAATTTATCGTCCACTTCTACTGTCCATGGCCATTTAGCCCGACTTGAGAAGAAGG
GCTTATTACAAAAGGATCCCACTAAGCCACGGGCGATCGAGTTAACGCCCGCTGGCCTAACGGCAATTGGGGCGACACCC
CAGAAAATACCAGTATTAGGGGTGGTTACTGCCGGTGTGCCTATCTTAGCAGTTGAAGAAGCAACTGATTACTTCCCGCT
TCCACCTAGTTTGCAAACCGAACAAGATTTGTTCATGCTAACAATTCGTGGTGAAAGTATGATTAATGCCGGTATCTTAG
ATGGCGACGAAGTTATCATTCGCAAGCAATCAACCGCCGATAATGGCGATATTGTCATTGCGATGACTGCCGAAGATGAA
GCAACCTGCAAACGGTTCTTCAAAGAAGCAGATCACTATCGTCTCCAACCAGAAAACGATACGTTTGAACCAATCATTTT
AAATGAAGTCAGCATTCTAGGGAAGGTCGTTGGCCTTTACCGAGATCGCATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(3-65)

Peptidase S24-like (Peptidase_S24)

(84-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38W54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

59.901

99.02

0.593