Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QY867_RS04605 Genome accession   NZ_CP129529
Coordinates   903115..905427 (+) Length   770 a.a.
NCBI ID   WP_341843897.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 898115..910427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS04580 (QY867_04575) - 899030..899425 (+) 396 WP_016265361.1 LPXTG cell wall anchor domain-containing protein -
  QY867_RS04585 (QY867_04580) - 899415..901133 (+) 1719 WP_061827024.1 WxL domain-containing protein -
  QY867_RS04590 (QY867_04585) - 901184..901510 (-) 327 WP_337457512.1 heavy metal-binding domain-containing protein -
  QY867_RS04595 (QY867_04590) - 901527..901892 (-) 366 WP_011374976.1 DUF1304 domain-containing protein -
  QY867_RS04600 (QY867_04595) galE 901978..902970 (-) 993 WP_035146095.1 UDP-glucose 4-epimerase GalE -
  QY867_RS04605 (QY867_04600) recJ 903115..905427 (+) 2313 WP_341843897.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QY867_RS04610 (QY867_04605) - 905451..905969 (+) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  QY867_RS04615 (QY867_04610) dinR/lexA 906103..906717 (-) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  QY867_RS04620 (QY867_04615) - 906852..907094 (+) 243 WP_011374971.1 DUF896 domain-containing protein -
  QY867_RS04625 (QY867_04620) - 907175..907405 (+) 231 WP_011374970.1 YneF family protein -
  QY867_RS04630 (QY867_04625) - 907547..909292 (+) 1746 WP_341843898.1 ABC transporter transmembrane domain-containing protein -

Sequence

Protein


Download         Length: 770 a.a.        Molecular weight: 84869.70 Da        Isoelectric Point: 4.5390

>NTDB_id=779792 QY867_RS04605 WP_341843897.1 903115..905427(+) (recJ) [Latilactobacillus sakei strain A1291]
MEAQYEWQLKPVPTEDELQTITKDNPLPKAAAQLLWQRGLRDAEQINDFMNPNVGQLHDPYALHDMQKAIDRIQEAIVNG
EKITIYGDYDADGITSTTLMKETLDDLGADVEVYVPNRFKDGYGPNLEAYKRLIENGTQLIVTVDNGVSGLEPIAYAQEH
GVDVVLTDHHELPSELPNAVAIVHPRHPEGQYPFGELCGVGVAFKVATALLEEIPYDKLDLAAIGTVCDIVPLVDENRTL
VSLGLQQLQNTDRPGLVALCQSAGLEQATLDATNIGFGIGPRLNAIGRLGDATLGVQLLTTLDDEEAVEQAQFIEQQNKK
RQGLVQEITATAMTIAETTENQASATLVIAHEGWHEGVLGIVASHVVEQTGKPTLVLTIDPETGLAKGSGRSVTAFHLFK
ALDAHRELLVHFGGHHMAVGLTAKVDQLALIQAAMNEYAQVNQLDLTGRQPLPVDLALTLADITPDLYQALQQLAPFGSD
NPEPLIELSAPQLADVKQIGADQKHLKMMAVDQQQQLAVLAFNKGALMPDLTAAEDVKLVGSLSENTWRGQTTLQLMVKD
LATSGQVILDQRSNRLTKQLFQSTGDYVFFNDKMREQLQSYLPAGSQALLATDEQVATSQELIVVDEPADLTAFEQFYQQ
QQAAKLSLIFYAKHSAYLEGMPTKQQFATFLVYLRKHPNIEKARLAELAVYLKLQLPLMIFMLQVFFDLGFVRIERGLIT
AELQPEKHALESAPSYQKRLAKIEMEKQLVYSTFTEVKDWLATLPAVANR

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=779792 QY867_RS04605 WP_341843897.1 903115..905427(+) (recJ) [Latilactobacillus sakei strain A1291]
TTGGAAGCACAATATGAATGGCAATTAAAACCAGTACCAACTGAAGATGAATTACAAACAATTACAAAAGACAATCCGCT
ACCCAAGGCTGCGGCCCAACTTTTGTGGCAACGTGGCTTGCGGGATGCAGAGCAGATCAATGATTTTATGAATCCCAATG
TCGGTCAACTTCACGATCCATACGCTTTGCATGATATGCAAAAGGCGATTGATCGAATTCAAGAAGCGATTGTGAACGGC
GAAAAAATTACGATTTATGGCGATTATGACGCGGACGGGATCACAAGTACCACTTTGATGAAGGAAACTTTAGACGACTT
AGGTGCCGATGTTGAAGTCTATGTGCCTAATCGTTTTAAGGATGGCTACGGGCCTAATTTAGAAGCTTATAAACGCTTGA
TTGAAAATGGCACCCAATTAATTGTGACCGTCGATAACGGGGTGAGTGGCTTAGAACCAATCGCTTACGCGCAAGAACAC
GGTGTTGACGTGGTCTTGACCGATCACCATGAATTACCATCAGAATTACCCAACGCAGTGGCGATTGTGCATCCCAGACA
TCCAGAAGGGCAATATCCTTTTGGCGAACTCTGTGGGGTCGGTGTGGCGTTTAAAGTGGCGACTGCTTTATTAGAAGAGA
TTCCTTACGATAAATTAGATTTAGCCGCAATCGGGACGGTTTGTGATATCGTCCCCCTAGTTGATGAAAACCGAACGTTG
GTTAGTTTGGGCTTACAACAATTACAAAATACTGATCGACCAGGCTTGGTTGCATTATGTCAATCAGCCGGCTTAGAACA
AGCGACACTAGATGCCACTAATATTGGTTTTGGGATTGGTCCCCGTTTAAACGCAATTGGTCGTTTAGGCGATGCGACCC
TTGGTGTGCAATTGTTGACGACACTTGATGACGAAGAAGCAGTTGAACAGGCACAGTTTATTGAACAACAAAATAAAAAA
CGCCAAGGGCTAGTGCAAGAAATTACAGCAACGGCAATGACAATTGCTGAAACAACGGAAAATCAAGCGAGTGCAACCTT
AGTTATTGCCCATGAAGGTTGGCACGAAGGGGTGCTAGGGATTGTAGCTAGTCACGTTGTTGAACAGACCGGTAAACCAA
CCTTAGTCTTGACGATTGATCCGGAAACTGGTTTAGCTAAAGGCTCTGGCCGTAGTGTGACAGCTTTTCATTTATTTAAA
GCGTTAGATGCCCACCGTGAATTATTGGTTCATTTTGGTGGCCATCACATGGCAGTTGGCTTGACTGCTAAGGTTGATCA
ATTAGCGCTGATTCAAGCTGCAATGAACGAGTATGCGCAAGTTAATCAGTTAGATTTAACGGGACGCCAACCATTACCAG
TTGATTTGGCGCTGACGTTGGCTGACATTACGCCTGATTTATACCAAGCATTACAACAACTGGCACCGTTTGGCAGTGAT
AATCCAGAACCGTTGATTGAACTTAGTGCGCCCCAGTTAGCCGATGTCAAACAAATTGGTGCTGATCAGAAGCATTTGAA
GATGATGGCGGTTGATCAACAACAACAATTAGCGGTTTTAGCTTTCAATAAAGGGGCTTTGATGCCCGATTTAACTGCCG
CTGAAGATGTGAAATTAGTCGGAAGTTTGAGTGAGAATACTTGGCGTGGCCAGACGACGTTGCAATTAATGGTAAAAGAC
CTTGCCACGAGTGGACAAGTCATACTTGATCAGCGTAGCAATCGCCTGACAAAACAATTATTCCAATCAACAGGCGACTA
CGTCTTTTTTAATGATAAAATGCGCGAGCAACTGCAGTCTTATTTACCGGCAGGGAGTCAGGCGCTGTTAGCGACCGATG
AACAAGTTGCTACTAGCCAAGAGTTAATTGTAGTTGATGAACCGGCTGATTTAACTGCTTTTGAACAATTTTATCAACAA
CAACAGGCCGCTAAATTAAGCTTGATTTTTTATGCTAAACACTCTGCTTACTTAGAAGGAATGCCGACAAAACAGCAGTT
TGCGACTTTCTTAGTCTACTTACGGAAGCACCCAAATATCGAAAAAGCGCGGTTAGCTGAATTAGCGGTGTATTTAAAAT
TACAATTACCGCTAATGATTTTCATGTTGCAGGTGTTTTTTGACCTCGGATTTGTTAGAATAGAACGTGGTCTGATTACG
GCCGAGTTACAACCTGAAAAGCATGCACTGGAAAGTGCACCAAGTTATCAAAAACGATTAGCTAAAATTGAAATGGAAAA
ACAGCTTGTTTATTCAACCTTTACCGAGGTGAAAGACTGGCTAGCAACTCTCCCAGCAGTAGCAAATCGCTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(317-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-761)

RecJ OB domain (RecJ_OB)

(454-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

40.079

98.831

0.396
  recJ Bacillus subtilis subsp. subtilis str. 168

37.371

100

0.377