Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PMJ84_RS26820 | Genome accession | NZ_CP116720 |
| Coordinates | 5686310..5687182 (+) | Length | 290 a.a. |
| NCBI ID | WP_015648060.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain 2866 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5681310..5692182
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PMJ84_RS26800 (PMJ84_26800) | - | 5681594..5682535 (-) | 942 | WP_228480041.1 | O-antigen ligase family protein | - |
| PMJ84_RS26805 (PMJ84_26805) | - | 5682693..5683157 (-) | 465 | WP_272226500.1 | pilin | - |
| PMJ84_RS26810 (PMJ84_26810) | pilB | 5683388..5685088 (+) | 1701 | WP_030048379.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PMJ84_RS26815 (PMJ84_26815) | pilC | 5685092..5686309 (+) | 1218 | WP_015648061.1 | type II secretion system F family protein | Machinery gene |
| PMJ84_RS26820 (PMJ84_26820) | pilD | 5686310..5687182 (+) | 873 | WP_015648060.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PMJ84_RS26825 (PMJ84_26825) | coaE | 5687179..5687790 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PMJ84_RS26830 (PMJ84_26830) | yacG | 5687787..5687987 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PMJ84_RS26835 (PMJ84_26835) | - | 5688024..5688233 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| PMJ84_RS26840 (PMJ84_26840) | - | 5688339..5689028 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| PMJ84_RS26845 (PMJ84_26845) | - | 5689025..5689495 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| PMJ84_RS26850 (PMJ84_26850) | - | 5689492..5689917 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PMJ84_RS26855 (PMJ84_26855) | - | 5690050..5690679 (+) | 630 | WP_015648058.1 | DUF1780 domain-containing protein | - |
| PMJ84_RS26860 (PMJ84_26860) | - | 5690676..5691125 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PMJ84_RS26865 (PMJ84_26865) | - | 5691151..5691321 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31889.86 Da Isoelectric Point: 7.3454
>NTDB_id=779777 PMJ84_RS26820 WP_015648060.1 5686310..5687182(+) (pilD) [Pseudomonas aeruginosa strain 2866]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGNCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGNCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=779777 PMJ84_RS26820 WP_015648060.1 5686310..5687182(+) (pilD) [Pseudomonas aeruginosa strain 2866]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAACTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAACTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55 |
96.552 |
0.531 |
| pilD | Vibrio campbellii strain DS40M4 |
51.943 |
97.586 |
0.507 |
| pilD | Acinetobacter nosocomialis M2 |
50.177 |
97.586 |
0.49 |
| pilD | Acinetobacter baumannii D1279779 |
50.177 |
97.586 |
0.49 |
| pilD | Neisseria gonorrhoeae MS11 |
48.201 |
95.862 |
0.462 |