Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   QYM42_RS05710 Genome accession   NZ_CP129526
Coordinates   1137206..1138441 (+) Length   411 a.a.
NCBI ID   WP_012897750.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1132206..1143441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS05685 (QYM42_05685) - 1133040..1133633 (+) 594 WP_003132093.1 xanthine phosphoribosyltransferase -
  QYM42_RS05690 (QYM42_05690) - 1133682..1134986 (+) 1305 WP_003132095.1 nucleobase:cation symporter-2 family protein -
  QYM42_RS05695 (QYM42_05695) - 1135015..1135428 (-) 414 WP_251900398.1 hypothetical protein -
  QYM42_RS05700 (QYM42_05700) - 1135548..1136057 (-) 510 WP_033899498.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  QYM42_RS05705 (QYM42_05705) - 1136456..1136962 (+) 507 WP_010905786.1 dihydrofolate reductase -
  QYM42_RS05710 (QYM42_05710) clpX 1137206..1138441 (+) 1236 WP_012897750.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QYM42_RS05715 (QYM42_05715) yihA 1138438..1139025 (+) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QYM42_RS05720 (QYM42_05720) folB 1139079..1139429 (+) 351 WP_003132106.1 dihydroneopterin aldolase -
  QYM42_RS05725 (QYM42_05725) folE 1139509..1140558 (+) 1050 WP_058202841.1 GTP cyclohydrolase I FolE -
  QYM42_RS05730 (QYM42_05730) folP 1140555..1141628 (+) 1074 WP_033899512.1 dihydropteroate synthase -
  QYM42_RS05735 (QYM42_05735) - 1141631..1142128 (+) 498 WP_103054721.1 NUDIX domain-containing protein -
  QYM42_RS05740 (QYM42_05740) - 1142147..1143430 (+) 1284 WP_301675373.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46024.89 Da        Isoelectric Point: 4.6053

>NTDB_id=779701 QYM42_RS05710 WP_012897750.1 1137206..1138441(+) (clpX) [Lactococcus lactis strain ZZ-2]
MSNTQNPNIHCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=779701 QYM42_RS05710 WP_012897750.1 1137206..1138441(+) (clpX) [Lactococcus lactis strain ZZ-2]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGCGGAAAGAGTCAAGATGATGTAAAAAAAATGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAGTACGTGATAGGTCAAGAAAAAGCAAAA
CGTGCACTTGCAGTTGCCGTTTATAATCATTACAAACGAATTAATTTTACAGCAAGTAAAATTGCTGAAGATATTGAACT
ACAAAAATCAAATATTCTATTAATCGGACCTACCGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTTA
ATGTTCCGTTTGCGATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTCTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCTGAACGTGGAATTATCTATATCGATGAAATTGATAAAATAGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCCGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAAG
GGACAGTAGCTAGCGTTCCACCACAAGGTGGACGTAAACATCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATCGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAATGACGATGACTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTTGGATTAA
TCCCTGAATTTATTGGTCGTCTGCCAATTGTTGCTGCTTTGGAACGTCTGACCGAAGAGGATTTGATTCAAATTTTGACA
GAACCTAAAAATGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAAGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATTACCAAAGTTATTATTAATGAAGCAGTTGTGGACGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.808

97.567

0.749
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.883

95.864

0.564