Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QYM42_RS02100 Genome accession   NZ_CP129526
Coordinates   417747..418559 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain ZZ-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 412747..423559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS02075 (QYM42_02075) ytpR 412972..413598 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  QYM42_RS02080 (QYM42_02080) nox 413761..415101 (+) 1341 WP_023188995.1 H2O-forming NADH oxidase -
  QYM42_RS02085 (QYM42_02085) - 415191..415580 (+) 390 WP_010905314.1 single-stranded DNA-binding protein -
  QYM42_RS02090 (QYM42_02090) groES 415700..415984 (+) 285 WP_003131589.1 co-chaperone GroES -
  QYM42_RS02095 (QYM42_02095) groL 416072..417700 (+) 1629 WP_058206244.1 chaperonin GroEL -
  QYM42_RS02100 (QYM42_02100) vicX 417747..418559 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  QYM42_RS02105 (QYM42_02105) vicK 418729..420171 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  QYM42_RS02110 (QYM42_02110) yycF 420164..420865 (-) 702 WP_003131580.1 response regulator YycF -
  QYM42_RS02115 (QYM42_02115) tmk 421043..421678 (+) 636 WP_012897230.1 dTMP kinase -
  QYM42_RS02120 (QYM42_02120) - 421811..422671 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  QYM42_RS02125 (QYM42_02125) yaaT 422723..423505 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=779679 QYM42_RS02100 WP_003131583.1 417747..418559(-) (vicX) [Lactococcus lactis strain ZZ-2]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=779679 QYM42_RS02100 WP_003131583.1 417747..418559(-) (vicX) [Lactococcus lactis strain ZZ-2]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACCCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCCATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAGAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGATCAGGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATCTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACCTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685