Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PMJ91_RS27070 | Genome accession | NZ_CP116715 |
| Coordinates | 5687404..5688276 (+) | Length | 290 a.a. |
| NCBI ID | WP_015648060.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain 2856 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5682404..5693276
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PMJ91_RS27050 (PMJ91_27050) | - | 5682688..5683629 (-) | 942 | WP_228480041.1 | O-antigen ligase family protein | - |
| PMJ91_RS27055 (PMJ91_27055) | - | 5683787..5684251 (-) | 465 | WP_023129290.1 | pilin | - |
| PMJ91_RS27060 (PMJ91_27060) | pilB | 5684482..5686182 (+) | 1701 | WP_030048379.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PMJ91_RS27065 (PMJ91_27065) | pilC | 5686186..5687403 (+) | 1218 | WP_015648061.1 | type II secretion system F family protein | Machinery gene |
| PMJ91_RS27070 (PMJ91_27070) | pilD | 5687404..5688276 (+) | 873 | WP_015648060.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PMJ91_RS27075 (PMJ91_27075) | coaE | 5688273..5688884 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PMJ91_RS27080 (PMJ91_27080) | yacG | 5688881..5689081 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PMJ91_RS27085 (PMJ91_27085) | - | 5689118..5689327 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| PMJ91_RS27090 (PMJ91_27090) | - | 5689433..5690122 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| PMJ91_RS27095 (PMJ91_27095) | - | 5690119..5690589 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| PMJ91_RS27100 (PMJ91_27100) | - | 5690586..5691011 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PMJ91_RS27105 (PMJ91_27105) | - | 5691144..5691773 (+) | 630 | WP_015648058.1 | DUF1780 domain-containing protein | - |
| PMJ91_RS27110 (PMJ91_27110) | - | 5691770..5692219 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PMJ91_RS27115 (PMJ91_27115) | - | 5692245..5692415 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31889.86 Da Isoelectric Point: 7.3454
>NTDB_id=779678 PMJ91_RS27070 WP_015648060.1 5687404..5688276(+) (pilD) [Pseudomonas aeruginosa strain 2856]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGNCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGNCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=779678 PMJ91_RS27070 WP_015648060.1 5687404..5688276(+) (pilD) [Pseudomonas aeruginosa strain 2856]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAACTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAACTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55 |
96.552 |
0.531 |
| pilD | Vibrio campbellii strain DS40M4 |
51.943 |
97.586 |
0.507 |
| pilD | Acinetobacter nosocomialis M2 |
50.177 |
97.586 |
0.49 |
| pilD | Acinetobacter baumannii D1279779 |
50.177 |
97.586 |
0.49 |
| pilD | Neisseria gonorrhoeae MS11 |
48.201 |
95.862 |
0.462 |