Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QV376_RS05585 Genome accession   NZ_CP129523
Coordinates   1149382..1150119 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain YJX     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1144382..1155119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QV376_RS05555 yfiL 1144540..1144905 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  QV376_RS05560 aroF 1145115..1146185 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QV376_RS05565 tyrA 1146196..1147317 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QV376_RS05570 pheA 1147360..1148520 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  QV376_RS05575 pheL 1148619..1148666 (-) 48 WP_010723158.1 phe operon leader peptide -
  QV376_RS05580 raiA 1148770..1149111 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QV376_RS05585 comL 1149382..1150119 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QV376_RS05590 rluD 1150254..1151234 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QV376_RS05595 yfiH 1151231..1151962 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  QV376_RS05600 clpC 1152092..1154665 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=779609 QV376_RS05585 WP_000197686.1 1149382..1150119(-) (comL) [Escherichia coli strain YJX]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=779609 QV376_RS05585 WP_000197686.1 1149382..1150119(-) (comL) [Escherichia coli strain YJX]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376