Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   POF63_RS02130 Genome accession   NZ_CP116708
Coordinates   369198..370232 (+) Length   344 a.a.
NCBI ID   WP_000732708.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CNCTC 10/84 sCas9     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 364198..375232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF63_RS02090 (POF63_02090) tsaE 364273..364716 (+) 444 WP_016502535.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  POF63_RS02095 (POF63_02095) - 364709..365230 (+) 522 WP_000043150.1 GNAT family N-acetyltransferase -
  POF63_RS02100 (POF63_02100) - 365239..366546 (+) 1308 WP_000708159.1 LCP family protein -
  POF63_RS02105 (POF63_02105) - 366610..366906 (-) 297 WP_000690176.1 hypothetical protein -
  POF63_RS02110 (POF63_02110) - 366903..367322 (-) 420 WP_038406057.1 HIT family protein -
  POF63_RS02115 (POF63_02115) - 367658..368161 (+) 504 WP_000773457.1 hypothetical protein -
  POF63_RS02120 (POF63_02120) - 368213..368399 (-) 187 Protein_342 hypothetical protein -
  POF63_RS02125 (POF63_02125) pptA 368471..369214 (+) 744 WP_038406058.1 ABC transporter ATP-binding protein Regulator
  POF63_RS02130 (POF63_02130) pptB 369198..370232 (+) 1035 WP_000732708.1 ABC transporter permease Regulator
  POF63_RS02135 (POF63_02135) - 370290..371090 (+) 801 WP_000155919.1 phosphotransferase family protein -
  POF63_RS02140 (POF63_02140) trmB 371080..371715 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  POF63_RS02150 (POF63_02150) - 372168..372539 (+) 372 Protein_347 hypothetical protein -
  POF63_RS02155 (POF63_02155) - 373018..373460 (+) 443 Protein_348 hypothetical protein -
  POF63_RS02160 (POF63_02160) - 373567..373731 (+) 165 WP_000166480.1 hypothetical protein -
  POF63_RS02165 (POF63_02165) - 373733..374767 (+) 1035 WP_000822470.1 replication initiator protein A -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40255.67 Da        Isoelectric Point: 10.5425

>NTDB_id=779308 POF63_RS02130 WP_000732708.1 369198..370232(+) (pptB) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIMIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKAFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGRHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDIILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=779308 POF63_RS02130 WP_000732708.1 369198..370232(+) (pptB) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAATTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCATGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTAGTGATAACTTACAAGGTAAAGGCCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGGTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACCTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ATTATTAGCTTTAGGTCGCCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATATCATACTTATAAGGGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(147-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.547

100

0.485
  pptB Streptococcus salivarius strain HSISS4

48.256

100

0.483