Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   POF49_RS01685 Genome accession   NZ_CP116680
Coordinates   360755..361573 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii Canada BC-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355755..366573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF49_RS01650 (POF49_01650) - 356337..356467 (-) 131 Protein_316 hypothetical protein -
  POF49_RS01655 (POF49_01655) rpoZ 356506..356784 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  POF49_RS01660 (POF49_01660) gmk 356857..357486 (-) 630 WP_000015937.1 guanylate kinase -
  POF49_RS01665 (POF49_01665) ispH 357609..358559 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  POF49_RS01670 (POF49_01670) fimU 358729..359202 (+) 474 WP_001214060.1 pilus assembly FimT family protein Machinery gene
  POF49_RS01675 (POF49_01675) pilV 359196..359756 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  POF49_RS01680 (POF49_01680) pilW 359757..360758 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  POF49_RS01685 (POF49_01685) pilX 360755..361573 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  POF49_RS01690 (POF49_01690) pilY1 361585..365439 (+) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  POF49_RS01695 (POF49_01695) pilY2 365450..365932 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  POF49_RS01700 (POF49_01700) pilE 365929..366354 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=779032 POF49_RS01685 WP_000149374.1 360755..361573(+) (pilX) [Acinetobacter baumannii Canada BC-5]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=779032 POF49_RS01685 WP_000149374.1 360755..361573(+) (pilX) [Acinetobacter baumannii Canada BC-5]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993