Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   POF49_RS01670 Genome accession   NZ_CP116680
Coordinates   358729..359202 (+) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii Canada BC-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353729..364202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF49_RS01645 (POF49_01645) - 354192..356297 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  POF49_RS01650 (POF49_01650) - 356337..356467 (-) 131 Protein_316 hypothetical protein -
  POF49_RS01655 (POF49_01655) rpoZ 356506..356784 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  POF49_RS01660 (POF49_01660) gmk 356857..357486 (-) 630 WP_000015937.1 guanylate kinase -
  POF49_RS01665 (POF49_01665) ispH 357609..358559 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  POF49_RS01670 (POF49_01670) fimU 358729..359202 (+) 474 WP_001214060.1 pilus assembly FimT family protein Machinery gene
  POF49_RS01675 (POF49_01675) pilV 359196..359756 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  POF49_RS01680 (POF49_01680) pilW 359757..360758 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  POF49_RS01685 (POF49_01685) pilX 360755..361573 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=779029 POF49_RS01670 WP_001214060.1 358729..359202(+) (fimU) [Acinetobacter baumannii Canada BC-5]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=779029 POF49_RS01670 WP_001214060.1 358729..359202(+) (fimU) [Acinetobacter baumannii Canada BC-5]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987