Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PMC74_RS07160 Genome accession   NZ_CP116669
Coordinates   1572904..1575114 (+) Length   736 a.a.
NCBI ID   WP_095064910.1    Uniprot ID   -
Organism   Pseudomonas capeferrum strain TDA1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567904..1580114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMC74_RS07140 (PMC74_07140) - 1569787..1570410 (+) 624 WP_033700589.1 glutathione S-transferase -
  PMC74_RS07145 (PMC74_07145) - 1570543..1571475 (+) 933 WP_033700587.1 ABC transporter ATP-binding protein -
  PMC74_RS07150 (PMC74_07150) - 1571472..1572251 (+) 780 WP_033700586.1 ABC transporter permease -
  PMC74_RS07155 (PMC74_07155) - 1572264..1572761 (-) 498 Protein_1393 DUF2062 domain-containing protein -
  PMC74_RS07160 (PMC74_07160) comA 1572904..1575114 (+) 2211 WP_095064910.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PMC74_RS07165 (PMC74_07165) exbB 1575228..1575863 (+) 636 WP_033700585.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PMC74_RS07170 (PMC74_07170) - 1575860..1576294 (+) 435 WP_033700584.1 ExbD/TolR family protein -
  PMC74_RS07175 (PMC74_07175) lpxK 1576294..1577304 (+) 1011 WP_156311427.1 tetraacyldisaccharide 4'-kinase -
  PMC74_RS07180 (PMC74_07180) - 1577348..1577533 (+) 186 WP_003247142.1 Trm112 family protein -
  PMC74_RS07185 (PMC74_07185) kdsB 1577530..1578294 (+) 765 WP_047583572.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PMC74_RS07190 (PMC74_07190) - 1578294..1578758 (+) 465 WP_047583571.1 low molecular weight protein-tyrosine-phosphatase -
  PMC74_RS07195 (PMC74_07195) murB 1578755..1579774 (+) 1020 WP_033700580.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 78996.86 Da        Isoelectric Point: 10.7253

>NTDB_id=778970 PMC74_RS07160 WP_095064910.1 1572904..1575114(+) (comA) [Pseudomonas capeferrum strain TDA1]
MRTGMFALALGLLCLGFLPVLPSVGWLLVLLLGAVASLFTRLWPLGCFVLGLCWACWSAQHALDDRLAPGLDGRTVWLEG
RVAGLPSRTAQGVRFELEQAASRRGALPRRLQLSWYDGPPLRAGEHWRLAVTLQRPAGLLNPHGPDREAQLLARRIGATG
TVKAGQVLSAVAGGWRDELRQRLLAVDANGRQAALVALVLGDGGGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAMLPLLLALVAVLLVEPL
AGLLPGLWLSFSAVAILIYCFGARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLLAVPWVSLAVLPLAL
LGTLLLPLPGFGEALLWLAGGLLDVLFRVLAVVAGWRPAWVPPALPLWAWALVGVAALLVLLPRGVPMRGLGGVMLLALW
VPREPVAAGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPAKGEYDLGERVVLPTLRKLGVGSLDLMLISHAHADHAGGAG
AIHRGLPVRRMLGGEALEGLALQPCVSGEQWEWDGVRFSLWRWAEGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERSWL
AAHGATRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGLAIHDTAVEGALRLVLGAQG
AVEGVRGQRRFWRGGE

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=778970 PMC74_RS07160 WP_095064910.1 1572904..1575114(+) (comA) [Pseudomonas capeferrum strain TDA1]
ATGCGCACAGGGATGTTTGCGCTCGCACTCGGGCTGCTTTGCCTGGGTTTTCTTCCCGTATTGCCATCGGTCGGATGGCT
GCTTGTGCTGTTGCTCGGCGCCGTCGCCAGCCTGTTCACCCGGTTGTGGCCATTGGGCTGCTTTGTGCTGGGGCTGTGCT
GGGCGTGCTGGTCGGCCCAGCACGCGCTGGACGATCGGCTCGCGCCTGGGCTTGATGGCCGCACAGTGTGGCTGGAGGGC
AGGGTAGCCGGCCTGCCGAGCCGCACCGCGCAAGGTGTGCGGTTCGAGCTGGAGCAGGCCGCTTCGCGGCGTGGCGCATT
GCCACGGCGCTTGCAGCTGAGCTGGTACGACGGGCCGCCACTCAGGGCGGGCGAGCATTGGCGTTTGGCGGTGACCTTGC
AGCGCCCTGCCGGGCTGCTGAACCCGCACGGGCCTGATCGCGAAGCGCAGTTGCTGGCCCGGCGGATTGGCGCCACTGGC
ACGGTCAAGGCTGGGCAGGTGTTGAGCGCTGTGGCCGGTGGCTGGCGGGACGAACTGCGCCAACGCCTGCTGGCGGTCGA
TGCCAACGGCCGGCAGGCGGCGCTGGTGGCGTTGGTGCTTGGGGATGGCGGGGGCCTGGCCCGCGAGGATTGGCAGACGT
TGCAGGCCACGGGTACGGTCCACCTGCTGGTGATCTCTGGGCAGCATATCGGCCTGGTCGCGGGCCTGCTGTATGGCTTG
GTCGCCGGGCTGGCGCGGTGGGGGCTTTGGCCCGCACGGCTGCCCTGGTTGCCCTGGGCGTGTGGCTTGGCCATGGCGGC
AGCACTGGCCTATGGCTGGCTGGCCGGCGCTGGCGTACCGGTACAGCGCGCCTGCCTGATGCTGGCCGTGGTGCTGCTCT
GGCGCCTGCGTTTTCGCCACCTCGGCGCCATGCTGCCGTTGCTGCTGGCGCTGGTCGCGGTGCTGCTGGTTGAACCGTTG
GCGGGGCTGTTGCCTGGGCTCTGGCTGTCGTTTTCTGCCGTGGCCATTCTTATCTATTGCTTCGGCGCCCGGTTGGGCGG
CTGGCGGCCCTGGCAGGCCTGGACGCGCGCGCAGTGGGTGATCGCTATCGGTTTGCTGCCGGTGCTGCTGGCCACTGGTT
TGCCGGTGAGCCTGAGCGCGCCGCTGGCCAACCTGCTGGCGGTGCCGTGGGTCAGCCTGGCGGTTTTGCCGTTGGCGTTG
CTGGGTACGTTGCTTTTGCCCCTGCCGGGCTTCGGGGAGGCGCTGTTGTGGCTGGCTGGTGGCTTACTGGATGTGCTGTT
CAGGGTGTTGGCCGTGGTAGCGGGCTGGCGGCCAGCCTGGGTGCCGCCGGCTCTGCCGCTGTGGGCCTGGGCGTTGGTTG
GCGTGGCCGCGCTGTTGGTGTTGTTGCCCCGTGGCGTGCCCATGCGCGGGTTGGGTGGGGTCATGCTGCTGGCCCTGTGG
GTACCCAGAGAGCCGGTGGCAGCAGGGCAGGTGGAAGTCTGGCAGTTGGATGTCGGCCAGGGGCTGGCGGTACTGCTGCG
TACCCGTCATCACAGCCTGCTCTACGATGCCGGGCCGGCCAAGGGTGAGTACGACCTGGGCGAGCGGGTGGTGCTGCCAA
CCCTGCGCAAGTTGGGGGTGGGCAGCCTTGACCTGATGTTGATCAGCCACGCCCACGCCGACCATGCGGGCGGTGCTGGG
GCTATCCACCGTGGGCTGCCGGTCAGGCGGATGCTGGGTGGCGAGGCGCTGGAGGGCCTGGCGCTGCAACCATGTGTCAG
TGGGGAGCAATGGGAATGGGATGGCGTGCGCTTTTCGCTATGGCGTTGGGCTGAAGGGCAGAGCAGCAATGACCGCTCTT
GTGTGCTGCTGGTCGAGGCACAGGGGGAGCGGCTGCTGTTGGCGGGGGATATGGAGGCGGGTGCCGAACGGTCATGGCTG
GCGGCCCACGGGGCGACACGTATCGATTGGTTGCAGTCACCGCACCATGGCAGCCGTAGTTCGTCCACCGAGGCGTTTAT
CCGCGCTACGGCGCCGCGCGGGGTACTGATTTCGCGGGGGCGTAACAACAGTTTTGGTCATCCACATGCGCAAGTGGTCG
AACGTTATCGGCGGCATGGGCTGGCGATTCATGATACGGCGGTGGAAGGGGCGTTGCGGTTGGTGTTGGGGGCGCAGGGG
GCGGTGGAAGGTGTGCGCGGGCAGCGGCGGTTTTGGCGGGGTGGGGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.053

97.554

0.576
  comA Ralstonia pseudosolanacearum GMI1000

36.34

100

0.383