Detailed information NTG0778965

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PMC74_RS03410
• Genome accession: NZ_CP116669
• Coordinates: 740249..741115 (-)
• Length: 288 a.a.
• NCBI ID: WP_156310573.1
• Uniprot ID: -
• Organism: Pseudomonas capeferrum strain TDA1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 735249..746115

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PMC74_RS03375 (PMC74_03375)	-	735931..737226 (-)	1296	WP_033701435.1	NAD(P)/FAD-dependent oxidoreductase	-
PMC74_RS03380 (PMC74_03380)	-	737311..737484 (-)	174	WP_013970765.1	DUF3094 family protein	-
PMC74_RS03385 (PMC74_03385)	-	737617..738246 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
PMC74_RS03390 (PMC74_03390)	-	738302..738463 (-)	162	WP_178119813.1	hypothetical protein	-
PMC74_RS03395 (PMC74_03395)	-	738573..739256 (+)	684	WP_033701431.1	energy-coupling factor ABC transporter permease	-
PMC74_RS03400 (PMC74_03400)	yacG	739429..739629 (-)	201	WP_047582821.1	DNA gyrase inhibitor YacG	-
PMC74_RS03405 (PMC74_03405)	coaE	739626..740249 (-)	624	WP_047582819.1	dephospho-CoA kinase	-
PMC74_RS03410 (PMC74_03410)	pilD	740249..741115 (-)	867	WP_156310573.1	prepilin peptidase	Machinery gene
PMC74_RS03415 (PMC74_03415)	-	741118..742323 (-)	1206	WP_047582815.1	type II secretion system F family protein	-
PMC74_RS03420 (PMC74_03420)	-	742541..742951 (+)	411	WP_033701422.1	pilin	-
PMC74_RS03430 (PMC74_03430)	-	743350..744504 (+)	1155	WP_156310571.1	Fic family protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32057.19 Da
• Isoelectric Point: 7.2546

>NTDB_id=778965 PMC74_RS03410 WP_156310573.1 740249..741115(-) (pilD) [Pseudomonas capeferrum strain TDA1]
MTLWTFLAMEPAYFITLATVLGLLVGSFLNVVVYRLPIMLERQWQREAHEVLGLPVTEHERFDLCLPASQCTQCGHRIRA
WENIPVLSYLALRGRCSACKQRISVRYPLVEVGCALLSMVVAWRYGASVEALVLLPLTWSLLALSLIDHDQQLLPDAIVL
PGLWLGLIVNYFGVWVPLPDAVCGAVVGYLSLWTVYWLFKLVTGKEGMGYGDFKLLALLGAWGGWQVLPLTLLLSSVLGA
LVGVYLLRVRKHSMGTAMPFGPYLAIAGWIAVLWGDEIYASYMQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=778965 PMC74_RS03410 WP_156310573.1 740249..741115(-) (pilD) [Pseudomonas capeferrum strain TDA1]
ATGACTTTATGGACCTTCCTGGCGATGGAGCCGGCTTACTTCATCACCCTGGCGACCGTGCTCGGCCTGTTGGTGGGCAG
TTTTCTCAACGTTGTGGTGTACCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAGGCACACGAAGTGCTGGGGC
TGCCGGTGACCGAGCACGAGCGTTTCGACCTGTGCCTGCCGGCCTCGCAGTGCACGCAGTGCGGGCACCGGATACGGGCG
TGGGAAAACATCCCGGTGCTCAGCTACCTGGCGTTGCGCGGGCGCTGCTCGGCCTGCAAACAGCGCATCAGCGTGCGTTA
CCCGTTGGTCGAGGTGGGTTGTGCGCTGCTGTCGATGGTGGTGGCCTGGCGCTACGGGGCCAGCGTCGAGGCACTGGTGC
TGCTGCCGCTGACCTGGAGCTTGCTGGCCCTGAGCTTGATCGACCATGACCAACAACTACTGCCCGATGCCATCGTGCTG
CCGGGGCTGTGGCTTGGGCTGATCGTCAATTACTTCGGGGTATGGGTGCCCTTGCCCGATGCCGTATGCGGCGCGGTGGT
CGGGTACCTCAGCCTGTGGACGGTGTACTGGTTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGTTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCTTGTTGCTGTCGTCGGTGCTTGGGGCG
CTGGTTGGGGTGTACCTGCTGCGGGTGCGCAAGCATTCCATGGGTACGGCCATGCCATTTGGGCCCTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCTTACATGCAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.348	95.833	0.521
pilD	Acinetobacter baumannii D1279779	50.534	97.569	0.493
pilD	Acinetobacter nosocomialis M2	49.822	97.569	0.486
pilD	Vibrio campbellii strain DS40M4	50.362	95.833	0.483
pilD	Neisseria gonorrhoeae MS11	50.182	95.486	0.479