Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   PHA78_RS05480 Genome accession   NZ_CP116604
Coordinates   1113635..1114861 (-) Length   408 a.a.
NCBI ID   WP_099807028.1    Uniprot ID   -
Organism   Streptococcus sp. HN38     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1108635..1119861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS05450 - 1108648..1108872 (-) 225 WP_099807026.1 hypothetical protein -
  PHA78_RS05455 - 1108934..1110256 (-) 1323 WP_161944095.1 excalibur calcium-binding domain-containing protein -
  PHA78_RS05460 - 1110391..1110573 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  PHA78_RS05465 lepA 1110623..1112455 (-) 1833 WP_002943192.1 translation elongation factor 4 -
  PHA78_RS05470 ndk 1112551..1112964 (-) 414 WP_024413632.1 nucleoside-diphosphate kinase -
  PHA78_RS05475 yihA 1112987..1113574 (-) 588 WP_099871356.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  PHA78_RS05480 clpX 1113635..1114861 (-) 1227 WP_099807028.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  PHA78_RS05485 - 1115059..1115571 (-) 513 WP_099807030.1 dihydrofolate reductase -
  PHA78_RS05490 - 1115824..1116663 (-) 840 WP_099807031.1 thymidylate synthase -
  PHA78_RS05495 - 1116716..1117018 (-) 303 WP_099807032.1 hypothetical protein -
  PHA78_RS05500 - 1117030..1117308 (-) 279 WP_024397846.1 hypothetical protein -
  PHA78_RS05505 - 1117434..1118393 (-) 960 WP_024380702.1 ROK family glucokinase -
  PHA78_RS05510 - 1118487..1118822 (-) 336 WP_024376975.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45412.86 Da        Isoelectric Point: 4.5126

>NTDB_id=778766 PHA78_RS05480 WP_099807028.1 1113635..1114861(-) (clpX) [Streptococcus sp. HN38]
MAVKHNHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTELADTPKPQELLDILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPSQDDVKRVRVTKDAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=778766 PHA78_RS05480 WP_099807028.1 1113635..1114861(-) (clpX) [Streptococcus sp. HN38]
ATGGCTGTTAAGCATAATCATGAATTGATTTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAACAATGTCTTCATTTGTAATGAGTGTGTGGAGTTAGCTCAAGAAATTATTCGTGAAGAACTAGCAGAAGAAGTGT
TGACAGAATTGGCTGACACACCTAAGCCACAGGAATTGCTCGATATTTTAAACAATTATGTTATTGGACAAGATCGTGCT
AAACGTGCATTGGCTGTCGCTGTCTACAACCATTACAAACGTATTAATTTCCAAGATAGTCGCGATGAAAATGATGTTGA
TTTACAGAAATCAAACATTCTCATGATTGGTCCAACAGGTTCTGGTAAGACATTCTTGGCTCAAACCTTGGCTAAAAGTC
TAAATGTTCCATTTGCTATTGCGGATGCGACCGCTCTTACTGAAGCTGGTTATGTTGGTGAAGATGTCGAAAACATCCTT
CTCAAACTCTTGCAGGCGGCGGATTTTAACATCGATCGTGCTGAAAGAGGGATTATCTATGTGGATGAAATTGATAAGAT
TGCCAAAAAAGGTGAAAACGTGTCCATTACCCGAGATGTGTCGGGTGAAGGTGTCCAACAGGCTCTCTTGAAAATTATCG
AGGGAACGGTTGCAAGTGTCCCTCCACAAGGCGGACGCAAACATCCAAACCAAGAGATGATTCATGTTGATACCAAAAAT
ATCTTGTTCATTGTAGGTGGTGCCTTTGATGGTATTGAAGAAATCGTTAAACAACGTCTTGGTGAAAAAATCATCGGTTT
CGGTCAAAACAATCGTGCCATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGACATTCAAAAATTTGGTA
TTATTCCTGAGTTGATTGGTCGCTTGCCGGTATTTGCAGCCTTGGATCAATTAACAACCGAAGACTTGGTCCGTATTTTA
ACAGAGCCTAAGAATGCGTTGGTTAAACAATACCAGACCCTCTTGTCTTATGATGATGTAGAATTGGATTTTGACGAGGA
TGCCTTACTTGCCATTGCTGAAAAAGCAATCGAGCGAAAAACAGGTGCACGTGGTCTTCGTTCCATTATCGAAGAAACGA
TGTTGGATGTTATGTTTGAAGTTCCAAGTCAAGATGATGTCAAACGTGTTCGAGTGACAAAAGATGCAGTTGATGGTAAG
GAAAAGCCTTTGCTTGAAACAGCTTAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.951

99.265

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.706

98.529

0.578