Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PNR82_RS04215 Genome accession   NZ_CP116597
Coordinates   866503..866901 (+) Length   132 a.a.
NCBI ID   WP_243588894.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 22/194     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 861503..871901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNR82_RS04185 - 861713..862114 (+) 402 WP_243588890.1 F0F1 ATP synthase subunit epsilon -
  PNR82_RS04190 - 862296..863612 (+) 1317 WP_243588769.1 ISL3 family transposase -
  PNR82_RS04195 - 863739..863972 (+) 234 WP_243588891.1 DUF1146 family protein -
  PNR82_RS04200 murA 864078..865343 (+) 1266 WP_243588892.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PNR82_RS04205 fabZ 865386..865823 (+) 438 WP_103298003.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PNR82_RS04210 - 865873..866316 (-) 444 WP_243588893.1 YwpF-like family protein -
  PNR82_RS04215 ssb 866503..866901 (+) 399 WP_243588894.1 single-stranded DNA-binding protein Machinery gene
  PNR82_RS04220 - 867268..867985 (+) 718 Protein_834 transglycosylase family protein -
  PNR82_RS04225 tenA 868261..868950 (+) 690 WP_243588896.1 thiaminase II -
  PNR82_RS04230 thiD 868943..869764 (+) 822 WP_243588897.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PNR82_RS04235 thiM 869757..870548 (+) 792 WP_243588898.1 hydroxyethylthiazole kinase -
  PNR82_RS04240 thiE 870549..871187 (+) 639 WP_243588899.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15169.18 Da        Isoelectric Point: 4.9662

>NTDB_id=778701 PNR82_RS04215 WP_243588894.1 866503..866901(+) (ssb) [Staphylococcus sp. NRL 22/194]
MLNKIVIVGRMTKDAQIYEKEEVKIATFSVATERNYKDDNNEIVCDYIFCKAFGKTATNIEKYTSQGSLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPQSKNNEILSNSSFIEDTYPLDNLDIININ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=778701 PNR82_RS04215 WP_243588894.1 866503..866901(+) (ssb) [Staphylococcus sp. NRL 22/194]
ATGCTAAATAAGATAGTAATTGTAGGTCGTATGACTAAAGATGCTCAAATCTATGAAAAGGAAGAGGTGAAAATTGCTAC
CTTTAGCGTTGCAACTGAACGTAATTACAAAGACGATAATAATGAAATTGTTTGTGACTATATTTTTTGTAAAGCTTTTG
GCAAAACAGCAACGAATATCGAAAAATATACTAGTCAAGGTTCATTAGTAGGTATCACTGGCCAGATGCGTTCACGCAAG
TATGAAAAAGAAGGGCAAACGCATTTTGTAACAGAATTATATGTAGAAACTATAAAATTTATGTCCCCACAATCTAAAAA
TAACGAAATTCTCTCAAATAGCTCGTTTATTGAAGACACTTATCCCCTAGATAATCTAGACATTATTAATATTAATTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

77.099

99.242

0.765
  ssb Staphylococcus aureus MW2

76.336

99.242

0.758