Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PML84_RS00040 Genome accession   NZ_CP116587
Coordinates   9236..9814 (+) Length   192 a.a.
NCBI ID   WP_271793483.1    Uniprot ID   -
Organism   Companilactobacillus farciminis strain K68-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4236..14814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML84_RS00025 (PML84_00025) gyrB 4242..6191 (+) 1950 WP_010017921.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  PML84_RS00030 (PML84_00030) gyrA 6208..8700 (+) 2493 WP_271793482.1 DNA gyrase subunit A -
  PML84_RS00035 (PML84_00035) rpsF 8902..9198 (+) 297 WP_010017918.1 30S ribosomal protein S6 -
  PML84_RS00040 (PML84_00040) ssb 9236..9814 (+) 579 WP_271793483.1 single-stranded DNA-binding protein Machinery gene
  PML84_RS00045 (PML84_00045) rpsR 9836..10072 (+) 237 WP_010017915.1 30S ribosomal protein S18 -
  PML84_RS00050 (PML84_00050) - 10393..10593 (+) 201 WP_271793484.1 helix-turn-helix transcriptional regulator -
  PML84_RS00055 (PML84_00055) - 10624..11157 (+) 534 WP_271793485.1 DUF3278 domain-containing protein -
  PML84_RS00060 (PML84_00060) - 11314..13314 (+) 2001 WP_010017912.1 DHH family phosphoesterase -
  PML84_RS00065 (PML84_00065) rplI 13328..13783 (+) 456 WP_056945185.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21168.50 Da        Isoelectric Point: 4.7512

>NTDB_id=778641 PML84_RS00040 WP_271793483.1 9236..9814(+) (ssb) [Companilactobacillus farciminis strain K68-8]
MINRVVLVGRLTRDPELRYTANGAAVASFTVAVNRQFTNSQGEREADFINCVIWRKAAENFSNFTNKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVENFSLLESRAESEKRNSGAGSNQAPSYNNNNQSSQSPFGNNNNNNYGNNAGNGNFDNSNNNSN
NNNQSNNSNNNNGDPFANNSKPIDISDDDLPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=778641 PML84_RS00040 WP_271793483.1 9236..9814(+) (ssb) [Companilactobacillus farciminis strain K68-8]
ATGATTAATCGAGTAGTTTTAGTTGGACGCCTGACACGTGATCCTGAATTAAGATACACTGCTAATGGAGCAGCGGTTGC
CAGTTTTACAGTTGCTGTAAACAGACAATTTACTAATTCTCAAGGTGAACGTGAAGCCGATTTTATCAATTGTGTCATTT
GGAGAAAAGCTGCCGAGAATTTTTCTAATTTCACTAACAAAGGTTCTCTTGTAGGTATTGATGGACGTCTTCAAACACGT
AACTATGAAAACCAACAAGGACAACGAGTATATGTAACAGAAGTAGTTGTAGAAAACTTCTCCTTGTTAGAATCTCGTGC
CGAAAGTGAAAAGAGAAATTCCGGTGCTGGTTCCAATCAAGCACCTAGCTATAATAACAACAATCAATCAAGTCAGTCTC
CATTTGGAAATAATAATAACAACAATTATGGAAATAACGCTGGCAACGGCAATTTCGATAATAGTAACAACAATTCTAAT
AACAATAATCAATCTAACAATTCTAACAATAATAATGGCGATCCTTTTGCTAACAACAGCAAGCCGATTGACATTTCTGA
TGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.021

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.513

100

0.578