Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   QYR06_RS15275 Genome accession   NZ_CP129344
Coordinates   3241374..3242711 (-) Length   445 a.a.
NCBI ID   WP_010874089.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3236374..3247711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR06_RS15255 (QYR06_15210) - 3237180..3237311 (-) 132 WP_255345223.1 hypothetical protein -
  QYR06_RS15260 (QYR06_15215) trpC 3237476..3238363 (+) 888 WP_010874086.1 indole-3-glycerol phosphate synthase TrpC -
  QYR06_RS15265 (QYR06_15220) - 3238384..3240009 (-) 1626 WP_010874087.1 ammonium transporter -
  QYR06_RS15270 (QYR06_15225) - 3240006..3241076 (-) 1071 WP_010874088.1 potassium channel family protein -
  QYR06_RS15275 (QYR06_15230) clpX 3241374..3242711 (-) 1338 WP_010874089.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  QYR06_RS15280 (QYR06_15235) clpP 3242716..3243396 (-) 681 WP_010874090.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QYR06_RS15285 (QYR06_15240) tig 3243696..3245111 (-) 1416 WP_010874091.1 trigger factor -
  QYR06_RS15290 (QYR06_15245) - 3245605..3246621 (+) 1017 WP_010874092.1 aspartate-semialdehyde dehydrogenase -
  QYR06_RS15295 (QYR06_15250) dapA 3246681..3247586 (+) 906 WP_010874093.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49298.64 Da        Isoelectric Point: 4.9609

>NTDB_id=778474 QYR06_RS15275 WP_010874089.1 3241374..3242711(-) (clpX) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ]
MPKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNDILDEELLDVPPASTGERDGTGQKQKKSGQPRRRLTLEEL
PKPTAIKQYLDEYVIGQDEAKKVLSVAVYNHYKRLNLLERNQEIDPGDAVELQKSNILLVGPTGSGKTLLAQTLAKILEV
PFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGT
VANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVIEQRFGKKSMGFVRPGEGPSKEKRTADVLRQAEPDDLVKFG
LIPEFIGRIPVMACLNPLDEDALIAILTQPRNAIVKQYQTLLGMDHVELDFQPDAVRAIATEAHRRKTGARALRGIVEEL
MLDVMYELPSREDLTHCLITREMVEKRSTAELLLHPSSLPKPESA

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=778474 QYR06_RS15275 WP_010874089.1 3241374..3242711(-) (clpX) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ]
ATGCCCAAATACGACTCCCATCTGAAATGTTCTTTTTGTGGCAAATCCCAGGAGCAAGTCCGTAAATTAATTGCTGGCCC
TGGCGTGTACATTTGTGATGAATGTGTAGAACTCTGTAACGACATTTTGGATGAGGAGTTGTTGGATGTACCCCCTGCCT
CAACCGGGGAAAGGGATGGGACAGGTCAAAAACAAAAAAAATCTGGTCAGCCCCGTCGCCGTCTTACCCTAGAAGAATTA
CCCAAACCAACGGCAATCAAACAGTACCTGGATGAATATGTAATTGGCCAAGATGAGGCTAAAAAGGTGCTTTCCGTCGC
TGTTTATAACCACTACAAAAGATTAAACCTGCTGGAGCGCAATCAAGAGATTGATCCCGGCGATGCAGTGGAATTACAAA
AATCGAATATTCTTCTAGTGGGCCCCACGGGGTCTGGGAAAACCCTACTTGCCCAAACCCTGGCGAAAATTTTAGAAGTG
CCCTTCGCTGTGGCCGATGCCACTACCCTGACGGAAGCGGGCTACGTGGGGGAAGATGTGGAAAATATTTTGTTGAGACT
GCTCCAGGTAGCGGATTTGGATGTGGAAGAAGCCCAGCGAGGCATTATTTACATTGATGAAATTGATAAAATTGCCCGCA
AAAGTGAGAATCCTTCCATTACTAGAGATGTGTCCGGGGAAGGAGTACAGCAGGCTTTGTTAAAAATGTTGGAAGGAACG
GTGGCCAATGTGCCGCCCCAGGGAGGCAGAAAACATCCTTACCAAGACTGTATTCAAATTGATACCAGTAATATTCTCTT
CATCTGTGGTGGTGCTTTTGTCGGCTTAGAAAAGGTAATCGAACAAAGGTTTGGCAAAAAATCCATGGGCTTTGTGCGGC
CGGGAGAGGGGCCAAGTAAGGAAAAAAGAACTGCCGATGTGCTCCGTCAGGCAGAGCCCGATGACTTAGTCAAATTTGGT
CTGATTCCCGAATTTATTGGTCGTATTCCCGTGATGGCCTGCCTTAACCCCTTGGATGAGGATGCTTTAATTGCTATTCT
GACCCAGCCCCGCAATGCCATTGTTAAACAGTATCAAACCCTATTGGGTATGGACCATGTGGAGTTGGATTTTCAACCCG
ATGCGGTGCGGGCGATCGCCACGGAGGCCCACCGTCGTAAAACCGGAGCTAGGGCGTTACGGGGCATTGTGGAGGAATTA
ATGCTGGATGTGATGTATGAGTTGCCTTCCCGGGAAGATTTAACCCACTGCTTGATCACTAGGGAAATGGTGGAAAAACG
CTCCACAGCAGAATTATTGCTCCATCCTTCTTCCTTACCTAAACCGGAATCTGCTTAG

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)

AAA domain (Cdc48 subfamily) (AAA_2)

(133-331)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(338-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

59.145

94.607

0.56
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.504

95.955

0.533