NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	QYR08_RS00330	Genome accession	NZ_CP129343
Coordinates	74995..75804 (+)	Length	269 a.a.
NCBI ID	WP_010871270.1	Uniprot ID	-
Organism	Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 69995..80804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYR08_RS00305 (QYR08_00300)	-	70016..70393 (-)	378	WP_010871265.1	hypothetical protein	-
QYR08_RS00310 (QYR08_00305)	-	70420..70935 (-)	516	WP_010871266.1	hypothetical protein	-
QYR08_RS00315 (QYR08_00310)	-	70944..74042 (-)	3099	WP_010871267.1	UPF0182 family protein	-
QYR08_RS00320 (QYR08_00315)	-	73978..74229 (-)	252	WP_010871268.1	hypothetical protein	-
QYR08_RS00325 (QYR08_00320)	-	74498..74785 (+)	288	WP_010871269.1	PepSY domain-containing protein	-
QYR08_RS00330 (QYR08_00325)	pilD	74995..75804 (+)	810	WP_010871270.1	prepilin peptidase	Machinery gene
QYR08_RS00335 (QYR08_00330)	-	75955..76500 (-)	546	WP_010871271.1	adenylate kinase family protein	-
QYR08_RS00340 (QYR08_00335)	dapB	76580..77407 (-)	828	WP_010871272.1	4-hydroxy-tetrahydrodipicolinate reductase	-
QYR08_RS00345 (QYR08_00340)	-	77494..77826 (-)	333	WP_041425898.1	thioredoxin family protein	-
QYR08_RS00350 (QYR08_00345)	-	77980..78246 (-)	267	WP_020861351.1	DUF2442 domain-containing protein	-
QYR08_RS00355 (QYR08_00350)	-	78206..78445 (-)	240	WP_020861352.1	DUF4160 domain-containing protein	-
QYR08_RS00360 (QYR08_00355)	purL	78467..80800 (-)	2334	WP_010871274.1	phosphoribosylformylglycinamidine synthase subunit PurL	-

Sequence

Protein

Download Length: 269 a.a. Molecular weight: 29767.50 Da Isoelectric Point: 8.8249

                                >NTDB_id=778368 QYR08_RS00330 WP_010871270.1 74995..75804(+) (pilD) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]

MDPLIAPLAFLLAIALGCAVGSFLNVVAYRLPEGLSLVHPPSRCPHCGHRLGPKENVPVVGWLWLRGKCRWCQTAISPRY

PLVEAATGFLFALTCWRFGWQWQTFGYWILISFLISLTLIDWDTMTLPNSLTKPGLVLGLLFHLLLGWQRGHWIVPLVEA

IASAVLGLWLFDLIRMGGSLLLGREGMGDGDPKLASMVGAWLGWPSLLLTTFIACFIGSIYGGLKLLLGTLQRRQGFPFG

PFLAIGALISLFWGEKLITSYLNFVTPQF

Nucleotide

Download Length: 810 bp

                                >NTDB_id=778368 QYR08_RS00330 WP_010871270.1 74995..75804(+) (pilD) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ-S1]

ATGGATCCCCTGATTGCCCCCCTTGCTTTCCTACTTGCCATTGCTCTGGGCTGTGCCGTGGGTAGTTTTCTCAACGTGGT

GGCCTATCGTTTGCCAGAAGGTTTATCCCTGGTACATCCCCCTTCCCGTTGTCCCCACTGTGGCCACCGACTGGGCCCGA

AGGAGAATGTGCCAGTGGTGGGTTGGCTTTGGCTACGGGGTAAATGCCGTTGGTGCCAAACTGCCATTTCTCCCCGCTAT

CCCTTGGTGGAGGCTGCGACGGGATTCTTATTTGCCCTGACCTGTTGGCGTTTTGGTTGGCAGTGGCAAACCTTCGGCTA

CTGGATATTAATTAGTTTTTTAATCTCCCTGACTTTAATTGACTGGGACACCATGACCCTGCCCAATAGTTTGACTAAAC

CGGGATTGGTGCTTGGGCTGTTATTTCATTTACTACTGGGTTGGCAACGTGGCCATTGGATTGTCCCCTTGGTGGAGGCG

ATCGCCTCGGCGGTATTGGGGCTATGGTTGTTTGATTTGATCCGCATGGGAGGAAGTCTGTTGCTCGGTAGGGAAGGCAT

GGGGGACGGGGATCCCAAATTGGCATCCATGGTAGGGGCTTGGTTGGGCTGGCCGTCATTACTGTTGACCACCTTCATTG

CCTGTTTCATCGGTTCCATCTATGGGGGTTTGAAGTTACTGTTGGGCACATTGCAACGGCGACAGGGTTTTCCCTTTGGC

CCCTTTTTGGCGATCGGTGCCCTCATCAGTCTCTTTTGGGGTGAAAAATTGATCACTAGTTACTTAAATTTTGTGACCCC

ACAATTTTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(109-222)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(16-98)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Neisseria gonorrhoeae MS11	40.741	100	0.409
pilD	Vibrio campbellii strain DS40M4	37.324	100	0.394
pilD	Vibrio cholerae strain A1552	35.915	100	0.379

Detailed information NTG0778368