Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   QYC34_RS09705 Genome accession   NZ_CP129338
Coordinates   1823556..1824581 (+) Length   341 a.a.
NCBI ID   WP_046160386.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1818556..1829581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS09670 (QYC34_09670) ylbE 1818856..1819095 (+) 240 WP_003232231.1 YlbE-like family protein -
  QYC34_RS09675 (QYC34_09675) ylbF 1819211..1819660 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QYC34_RS09680 (QYC34_09680) ylbG 1819715..1819987 (+) 273 WP_024573211.1 YlbG family protein -
  QYC34_RS09685 (QYC34_09685) rsmD 1820310..1820864 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QYC34_RS09690 (QYC34_09690) coaD 1820869..1821354 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QYC34_RS09695 (QYC34_09695) spoVV 1821365..1822591 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  QYC34_RS09700 (QYC34_09700) ylbK 1822772..1823554 (+) 783 WP_046160385.1 patatin family protein -
  QYC34_RS09705 (QYC34_09705) sepM 1823556..1824581 (+) 1026 WP_046160386.1 protease DdcP Regulator
  QYC34_RS09710 (QYC34_09710) tmcAL 1824598..1825845 (-) 1248 WP_046160387.1 nucleotidyltransferase -
  QYC34_RS09715 (QYC34_09715) - 1825842..1826027 (-) 186 WP_003232215.1 hypothetical protein -
  QYC34_RS09720 (QYC34_09720) ylbN 1826055..1826573 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  QYC34_RS09725 (QYC34_09725) rpmF 1826595..1826774 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  QYC34_RS09730 (QYC34_09730) gerR 1826920..1827501 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  QYC34_RS09735 (QYC34_09735) ylbP 1827558..1828040 (-) 483 WP_014476736.1 N-acetyltransferase -
  QYC34_RS09740 (QYC34_09740) panEA 1828199..1829095 (+) 897 WP_046160388.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37665.26 Da        Isoelectric Point: 6.5347

>NTDB_id=778288 QYC34_RS09705 WP_046160386.1 1823556..1824581(+) (sepM) [Bacillus subtilis strain SRCM126725]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVTYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=778288 QYC34_RS09705 WP_046160386.1 1823556..1824581(+) (sepM) [Bacillus subtilis strain SRCM126725]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCACCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGTCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(70-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.857

100

0.399